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. 2014 Oct 20;9(10):e109291. doi: 10.1371/journal.pone.0109291

Table 4. Gominer Analysis based for over-expressed genes in CF signature versus HC.

GO ID GO category Number of significant genes Enrichment FDR
A. Cluster D - CF signature
GO:0008104 protein localization 73 1.74 0.00
GO:0033036 macromolecule localization 82 1.63 0.00
GO:0045184 establishment of protein localization 63 1.73 0.01
GO:0016050 vesicle organization 12 4.46 0.01
GO:0015031 protein transport 62 1.73 0.00
GO:0006464 protein modification process 97 1.49 0.01
GO:0046907 intracellular transport 56 1.75 0.01
GO:0051641 cellular localization 77 1.57 0.01
GO:0034613 cellular protein localization 41 1.94 0.01
GO:0070727 cellular macromolecule localization 41 1.93 0.01
GO:0043412 macromolecule modification 99 1.45 0.01
GO:0016192 vesicle-mediated transport 49 1.78 0.01
GO:0044260 cellular macromolecule metabolic process 242 1.19 0.01
GO:0006886 intracellular protein transport 35 1.92 0.01
B. Cluster E - CF signature
GO:0009611 response to wounding 54 2.48 0.00
GO:0006952 defense response 53 2.45 0.00
GO:0023052 signaling 148 1.54 0.00
GO:0023033 signaling pathway 121 1.63 0.00
GO:0023046 signaling process 112 1.60 0.00
GO:0023060 signal transmission 111 1.58 0.00
GO:0007165 signal transduction 101 1.62 0.00
GO:0006955 immune response 51 2.13 0.00
GO:0002376 immune system process 70 1.84 0.00
GO:0048583 regulation of response to stimulus 47 2.17 0.00
GO:0035466 regulation of signaling pathway 60 1.94 0.00
GO:0035556 intracellular signal transduction 73 1.78 0.00
GO:0007243 intracellular protein kinase cascade 41 2.28 0.00
GO:0023014 signal transmission via phosphorylation event 41 2.28 0.00
GO:0006954 inflammatory response 27 2.85 0.00
GO:0002263 cell activation involved in immune response 14 4.78 0.00
GO:0002366 leukocyte activation involved in immune response 14 4.78 0.00
GO:0006950 response to stress 100 1.57 0.00
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway 36 2.37 0.00
GO:0007166 cell surface receptor linked signaling pathway 74 1.73 0.00
GO:0023034 intracellular signaling pathway 80 1.65 0.00
GO:0050817 coagulation 28 2.61 0.00

Only GO categories enriched in cluster D (A) and in cluster E (B) with FDR less than 1%, with enrichment superior to 2 and with more than 10 genes are displayed.