Skip to main content
. 2014 Jun 25;8(4):344–349. doi: 10.4161/chan.29572

graphic file with name chan-8-344-g3.jpg

Figure 3. The mean square error of the RVE conformation deviation from its molecular conformation26 across the membrane in the closed and open states of MscL; Mean Square Error is defined as (MSE)=1ni=1n(RiRi(2 Where ^Ri is the orientation of an alternative point across the pore and Ri is the orientation of the corresponding point on the relevant MD graph of the pore.26n is the total number of points (nodes) which are distributed equally through the bilayer thickness (z coordinate) which was sufficient to be taken as 15. The unbroken line shows the sum of mean squares in the two (closed and open) states. E = 40 MPa would be the most appropriate value for the RVE Young’s modulus with respect to both closed and open conformations.