Skip to main content
. 2014 Oct 21;9(10):e110422. doi: 10.1371/journal.pone.0110422

Table 4. Analysis of intron positions shared with S. frugiperda fut8 (inumberl) in arthropoda and chordata orthologs fut8 genes.

Protein domain Stem Cys-rich Motif I Motif II Motif III Total IS (bp) Nb introns
Intron insertion sites i1l i2l i3l i4l i5l i6l i7l i8l i9l i10l i11l
Arthropoda Insecta Lepidoptera S. frugiperda 2/3,459 2/344 2/1,645 0/8,467 1/3,290 2/733 2/1,097 0/989 0/494 0/601 0/952 22,071 11
B. mori 2/3,280 2/2,841 2/5,599 0/1,203 1/1,197 2/355 2/483 0/1,167 0/1,971 0/1,188 0/795 20,079 11
D. plexippus 2/4,756 2/312 2/1,263 0/2,173 1/512 2/299 2/1,177 0/1,393 0/468 0/590 0/71 13,014 11
H. melpomene 2/1,633 2/712 2/1,821 0/7,380 1/1111 2/204 2/146 0/795 0/129 0/248 14,179 10
Coleoptera T. castaneum 0/9,139 1/52 2/1,524 0/8,806 21,186 5
Hemiptera A. pisum 0/67 1/91 2/118 0/62 752 7
Phtiraptera P. humanus 2/342 0/82 1/215 2/295 3,507 9
Diptera D. melanogaster 0/109 2/65 582 3
C. pipiens 2/62 0/98 160 2
L. longipalpis* 2/94 0/438 ≥3,290 ≥3
Arachnida Mesostigmata M. occidentallis 0/210 1,581 8
Trombidiformes T. urticae 1,173 6
Branchiopoda Cladocera D. pulex 2/65 0/60 1/61 2/55 320 5
Maxilopoda Siphonostomatoida L. salmonis 0 0
Chilopoda Geoplilomorph S. maritima 2/292 0/56 2,591 6
Chordata Acidiacae Enterogona C. intestinalis A 2/836 1/906 2/820 0/447 0/5,797 10,989 10
Mammalia Primate H. sapiens 2/13,118 1/52,295 2/2,125 0/8,711 130,359 8
Rodentia R. norvegicus 2/19,848 1/36,598 2/1,403 0/11,243 131,971 8
Artiodactyla B. taurus 2/14,139 1/40,145 2/4,795 0/11,832 173,134 8

IS: intronic sequence, Nb: number. The intron phase was defined as follows: phase 0 introns are inserted between two codons; phase 1 introns are inserted after the first nucleotide of the codon, and phase 2 introns are inserted between the second and the third nucleotide of the codon.

(*) The gene is truncated and the 5′ exon is missing.