Table 4. Analysis of intron positions shared with S. frugiperda fut8 (inumberl) in arthropoda and chordata orthologs fut8 genes.
Protein domain | Stem | Cys-rich | Motif I | Motif II | Motif III | Total IS (bp) | Nb introns | |||||||||
Intron insertion sites | i1l | i2l | i3l | i4l | i5l | i6l | i7l | i8l | i9l | i10l | i11l | |||||
Arthropoda | Insecta | Lepidoptera | S. frugiperda | 2/3,459 | 2/344 | 2/1,645 | 0/8,467 | 1/3,290 | 2/733 | 2/1,097 | 0/989 | 0/494 | 0/601 | 0/952 | 22,071 | 11 |
B. mori | 2/3,280 | 2/2,841 | 2/5,599 | 0/1,203 | 1/1,197 | 2/355 | 2/483 | 0/1,167 | 0/1,971 | 0/1,188 | 0/795 | 20,079 | 11 | |||
D. plexippus | 2/4,756 | 2/312 | 2/1,263 | 0/2,173 | 1/512 | 2/299 | 2/1,177 | 0/1,393 | 0/468 | 0/590 | 0/71 | 13,014 | 11 | |||
H. melpomene | 2/1,633 | 2/712 | 2/1,821 | 0/7,380 | 1/1111 | 2/204 | 2/146 | 0/795 | 0/129 | 0/248 | 14,179 | 10 | ||||
Coleoptera | T. castaneum | 0/9,139 | 1/52 | 2/1,524 | 0/8,806 | 21,186 | 5 | |||||||||
Hemiptera | A. pisum | 0/67 | 1/91 | 2/118 | 0/62 | 752 | 7 | |||||||||
Phtiraptera | P. humanus | 2/342 | 0/82 | 1/215 | 2/295 | 3,507 | 9 | |||||||||
Diptera | D. melanogaster | 0/109 | 2/65 | 582 | 3 | |||||||||||
C. pipiens | 2/62 | 0/98 | 160 | 2 | ||||||||||||
L. longipalpis* | 2/94 | 0/438 | ≥3,290 | ≥3 | ||||||||||||
Arachnida | Mesostigmata | M. occidentallis | 0/210 | 1,581 | 8 | |||||||||||
Trombidiformes | T. urticae | 1,173 | 6 | |||||||||||||
Branchiopoda | Cladocera | D. pulex | 2/65 | 0/60 | 1/61 | 2/55 | 320 | 5 | ||||||||
Maxilopoda | Siphonostomatoida | L. salmonis | 0 | 0 | ||||||||||||
Chilopoda | Geoplilomorph | S. maritima | 2/292 | 0/56 | 2,591 | 6 | ||||||||||
Chordata | Acidiacae | Enterogona | C. intestinalis A | 2/836 | 1/906 | 2/820 | 0/447 | 0/5,797 | 10,989 | 10 | ||||||
Mammalia | Primate | H. sapiens | 2/13,118 | 1/52,295 | 2/2,125 | 0/8,711 | 130,359 | 8 | ||||||||
Rodentia | R. norvegicus | 2/19,848 | 1/36,598 | 2/1,403 | 0/11,243 | 131,971 | 8 | |||||||||
Artiodactyla | B. taurus | 2/14,139 | 1/40,145 | 2/4,795 | 0/11,832 | 173,134 | 8 |
IS: intronic sequence, Nb: number. The intron phase was defined as follows: phase 0 introns are inserted between two codons; phase 1 introns are inserted after the first nucleotide of the codon, and phase 2 introns are inserted between the second and the third nucleotide of the codon.
(*) The gene is truncated and the 5′ exon is missing.