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. 2014 Sep 29;111(41):14840–14845. doi: 10.1073/pnas.1416864111

Table 2.

T-cell clones respond to register-fixed DQ8/Ins complexes in R3

DQ8-Ins Peptide* T1D#10 C8 T1D#3 C8 T1D#4 C5
I72C-R1 LEEALYLVAEEC
I72C-R2 VEALYLVAGERC
I72C-R3 VEELYLVAGEEGC 1.5 31.6 4.9
I72C-R4 VEAEYLVAGEREGC 0.4 0.1
V65C-R1 LEEALYCVAEER
V65C-R2 VEALYLCAGERG
V65C-R3 VEELYLVCGEEGG 2.3 38.8 0.4
V65C-R4 VEAEYLVACEREGG

The lowest concentration of IFN-γ standard was 0.017 ng/mL and readings below this level are indicated as with an “—.”

*

To “trap” each peptide in a specific register, corresponding p1 and p9 anchor residues of the peptide were mutated to E (in bold). To “fix” the peptide in a specific register by disulfide bonding, each set of peptides had a single C residue (underlined) at position p6 (to bind to V65C) or at p11 (to bind to I72C). The other C residue that would not be at p6 was changed to A (Italic).

T-cell clones were stimulated with B6K10 cells expressing the indicated register-fixed constructs and assayed for secreted human IFN-γ (ng/mL).