Table 1.
Brief overview of statistical network inference methods that have been introduced in recent years and the key methods (second column) on which the inference algorithms are based on to estimate interactions.
| Name | Method | References |
|---|---|---|
| RN | Mutual information | Butte and Kohane, 2000 |
| Aracne | Mutual information, DPI | Margolin et al., 2006 |
| CLR | Mutual information with background | Faith et al., 2007 |
| C3Net | Maximal mutual information | Altay and Emmert-Streib, 2010a |
| BC3Net | Bagging C3Net | de Matos Simoes and Emmert-Streib, 2012 |
| GENIE3 | Regression | Huynh-Thu et al., 2010 |
| GGM | Full partial correlation | Wille et al., 2004 |
| MRNet | Conditional mutual information | Meyer et al., 2008 |
| MI3 | Three-way mutual information | Luo et al., 2008 |