Table 5.
GCs and their effect on target genes
| GC | EFFECT | GENE/operon name |
|---|---|---|
| 2,2′-dipyridyl treatment | Induction | mntH |
| 2,2′-dipyridyl treatment | Inhibition | mntS |
| 2,2′-dipyridyl treatment | Induction | isc |
| 2,2′-dipyridyl treatment | Induction | suf |
| Aerobiosis | Induction | katG |
| Anaerobiosis | Induction | arcA |
| Anaerobiosis | Induction | hcp |
| Anaerobiosis | Inhibition | lctPRD |
| Anaerobiosis + nitrate treatment | Induction | hcp |
| Anaerobiosis + nitrite treatment | Induction | hcp |
| Carbon starvation | Induction | csiD |
| Δfur mutant | Induction | ryhB |
| ΔoxyR mutant | Induction | sufA |
| EDTA treatment | Induction | mntH |
| Exponential growth | Induction | bolA |
| Fructuronate treatment | Induction | uxuAB |
| Gluconate treatment | Inhibition | gntP |
| Glucose treatment | Inhibition | gntP |
| Glucose treatment | Inhibition | oxyR |
| Glucose treatment | Inhibition | uxuAB |
| Glucuronate treatment | Induction | uxuAB |
| Hydrogen peroxide treatment | Induction | fpr |
| Hydrogen peroxide treatment | Induction | iscRSUA |
| Hydrogen peroxide treatment | Inhibition | rplB |
| Hydrogen peroxide treatment | Induction | sodA |
| Hydrogen peroxide treatment | Induction | soxS |
| Hydrogen peroxide treatment | Induction | yaeH |
| Hydrogen peroxide treatment | Induction | ydcH |
| Hydrogen peroxide treatment | Induction | ydeN |
| Hydrogen peroxide treatment | Inhibition | yfdI |
| Hydrogen peroxide treatment | Induction | ygaQ |
| Hydrogen peroxide treatment | Induction | ytfK |
| Hydrogen peroxide treatment | Inhibition | fldA |
| Hydrogen peroxide treatment + Δfur mutant | Induction | sufA |
| Iron starvation | Induction | mntH |
| Iron starvation | Induction | isc |
| L-ascorbate + glutamine treatment | Induction | yiaK |
| L-ascorbate + proline treatment | Induction | yiaK |
| L-ascorbate + threonine treatment | Induction | yiaK |
| L-ascorbate treatment | Induction | ulaA |
| L-ascorbate treatment | Induction | ulaG |
| L-ascorbate treatment | Induction | yiaK |
| L-ascorbate treatment + early exponential phase | Regulation | ahpC |
| Mannonic amide treatment | Induction | uxuAB |
| Menadione treatment | Induction | ahpC |
| Menadione treatment | Induction | ryhB |
| Menadione treatment | Induction | sufA |
| Menadione treatment + DoxyR | Induction | sufA |
| Menadione treatment + DsoxRS | Induction | sufA |
| Menadione treatment + DsoxS | Induction | sufA |
| Mncl2 treatment | Induction | sodA |
| Nitrosative stress | Induction | hcp-hcr |
| Nitrosative stress | Induction | hmp |
| Nitrosative stress | Induction | yeaR-yoaG |
| Nitrosative stress | Induction | ytfE |
| Paraquat treatment | Induction | fldA-fur |
| Paraquat treatment | Induction | oxyS |
| Paraquat treatment | Induction | soxS |
| Paraquat treatment | Induction | sufA |
| Plumbagin treatment | Induction | sufA |
| PMS treatment | Induction | ahpC |
| PMS treatment | Induction | katG |
| PMS treatment | Induction | ryhB |
| PMS treatment + Dfur mutant | Induction | sufA |
| Stationary phase | Induction | katE |
| Stationary phase | Inhibition | oxyR |
| Superoxide treatment | No effect | mntH |
As discussed in the text, ‘induction’ and ‘inhibition’ are used here because there is no knowledge about the mechanism or TF involved in these interactions.