Table 1. Prediction of putative AcaCD-binding sites in SGI1 and MGIVmi1.
Element | Strand | Start | End | p-valuea | Matched Sequenceb | Downstream gene(s) |
SGI1 | − | 2016 | 2043 | 3.2e-10 | TTCGCGCCCTAAAAGGGCAGATCCAGAG | xis |
SGI1 | − | 3541 | 3568 | 1.2e-11 | TAGGTGCCCAAATAGGGCACTTCCAGAG | S004/rep |
SGI1 | − | 6444 | 6471 | 6.1e-06 | CGTATGCCGCAAAAGGGCAAATAGCGAT | traN |
SGI1 | − | 13484 | 13511 | 7.9e-09 | GGACTGCCCAAATTGGACAGTTTGGGAG | trhH/trhG |
SGI1 | − | 16360 | 16387 | 2.6e-12 | AATGTGCCCAAAAAGGGCCAATACAGCG | S018 |
MGIVmi1 | + | 6832 | 6859 | 1.7e-07 | AAAATGCCCAATCAGGACAGTTTGAGCG | VMD_06480/06470 |
MGIVmi1 | − | 6827 | 6854 | 7.8e-06 | AAACTGTCCTGATTGGGCATTTTCGCAG | VMD_06490 |
MGIVmi1 | + | 15770 | 15797 | 2.4e-06 | TTCAGTACCAAAATGGGCAATTACAGAT | VMD_06420/xis |
aOnly output matches with p-values below 1.0e-05 are shown and considered as significant hits.
bMatches were predicted by FIMO (MEME suite) based on the AcaCD logo presented in Figure 3C.