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. 2014 Oct 23;10(10):e1004692. doi: 10.1371/journal.pgen.1004692

Figure 3. mRNA vs. footprint differences.

Figure 3

Shown are log2-transformed fold changes. A–C: parents, D–F: hybrid ASE. Grey dashed lines are the diagonal. Left column: all genes. Middle column: genes with a significant (Bonferroni corrected: p<9e-6 in parent data and p<1.5 e-5 in hybrid data) mRNA (red), footprint (blue) or both mRNA and footprint (purple) difference. Right column: genes with a significant TE difference. Red: genes with only a significant mRNA difference, blue: genes with only a significant footprint difference, purple: genes with both a significant mRNA and footprint difference, orange: genes with neither a significant mRNA nor a significant footprint difference.