Table 1.

Postimputation SNPs with P value <5 × 10⁻⁶

SNP	CHR	Position	Major allele	Frequency of major allele	RSQRa	Effect 1	OR	SEM	LR chi square	P value of LR	Symbol	Predicted function	Splice distance
rs61973742	13	102083273	A	0.9384	0.8881	1.579	4.848	0.415	23.9755	9.76E-07	NALCN	5′ Upstream
rs1338051	13	102062341	G	0.6595	0.9932	−0.481	0.618	0.1	22.5497	2.05E-06	NALCN	Intronic	6323
rs9518385	13	102060280	A	0.6597	0.9947	−0.48	0.618	0.1	22.5411	2.06E-06	NALCN	Intronic	8384
rs9518384	13	102059871	C	0.6597	0.9951	−0.48	0.619	0.1	22.5246	2.08E-06	NALCN	Intronic	8355
rs1338041b	13	102058862	A	0.6597	0.9955	−0.48	0.619	0.1	22.4931	2.11E-06	NALCN	Intronic	7346
rs619152b	13	110939497	G	0.6437	0.9328	−0.489	0.614	0.103	22.1724	2.49E-06	COL4A1	Intronic	19794
rs3916908	13	102058054	A	0.6602	0.9949	−0.477	0.621	0.1	22.1374	2.54E-06	NALCN	Intronic	6538
rs12132318	1	183797688	T	0.9376	0.3209	−1.422	0.241	0.28	22.0992	2.59E-06	RGL1	Intronic	19012
rs67863238	11	48267856	G	0.9439	0.8808	1.608	4.994	0.442	21.7354	3.13E-06	OR4X2	3′ Downstream
rs1249277	10	28720076	G	0.8497	0.9894	−0.574	0.563	0.118	21.5017	3.54E-06		Intergenic
rs1249281	10	28716177	G	0.8505	0.9956	−0.572	0.564	0.118	21.3706	3.79E-06		Intergenic
rs9416795b	10	28709550	G	0.8508	0.9998	−0.57	0.565	0.118	21.2877	3.95E-06		Intergenic
rs10930717	2	176742322	G	0.9524	0.9092	−0.896	0.408	0.177	21.1596	4.23E-06	KIAA1715	3′ Upstream
rs35875350	11	48230490	G	0.9433	0.9333	1.513	4.538	0.421	20.9828	4.63E-06	OR4B1	5′ Upstream

^aQuality measure of imputation, from 0 to 1, with values <0.3 suggestive of poorly imputed.

^bSNP also found in the nonimputed genotype platform.

SNP, single-nucleotide polymorphism; CHR, chromosome; RSQR, r squared (r²); OR, odds ratio; SEM, standard error of the mean; LR, likelihood ratio.