Table 1. Amino acid sequence divergence (%) of p24 in VLP panel and LANL reference subtypes after pairwise sequence alignment.
VLP panel | LANL reference subtypes | |||
n | p24 | n | p24 | |
A1 | 5 | 8.0±1.9 | 3 | 8.3±1.6 |
B | 7 | 5.4±1.6 | 4 | 3.3±1.9 |
C | 5 | 6.1±0.9 | 4 | 5.2±1.8 |
D | 4 | 7.6±3.9 | 4 | 4.1±1.2 |
CRF12_BF | 4 | 6.5±2.3 | 3 | 3.6±0.3 |
F2 | 1 | N/A | N/A | N/A |
G | 4 | 6.7±1.8 | 4 | 4.6±2.8 |
CRF20_BG | 1 | N/A | N/A | N/A |
H | 1 | N/A | N/A | N/A |
CRF01_AE | 4 | 4.7±1.8 | 3 | 4.1±1.3 |
CRF02_AG | 5 | 8.3±1.9 | 3 | 4.3±0.9 |
group O | 2 | 8.2 | 4 | 8.3±1.3 |
weighted average | 6.7±1.2 | 5.1±1.8 |
N/A = not applicable; n = number of sequences.