Table 1.

Simple Repeats and TEs in SCNA Paralogs as Detected by CENSOR.

	SCN1A		SCN2A		SCN3A		SCN4A		SCN8A		SCN9A
Repeat Class	No.	Length	No.	Length	No.	Length	No.	Length	No.	Length	No.	Length
Simple repeat	0	0	0	0	0	0	1	33	0	0	0	0
Satellite	0	0	0	0	0	0	1	33	0	0	0	0
SAT	0	0	0	0	0	0	1	33	0	0	0	0
TE	30	5,199	26	5,770	35	4,979	74	16,119	63	7,292	81	10,298
DNA transposon	11	2,277	8	948	11	986	13	1,990	29	2,213	37	4,083
Dada	0	0	1	189	0	0	1	52	0	0	0	0
Harbinger	0	0	0	0	0	0	1	119	0	0	1	39
Mariner/Tc1	5	1,811	1	73	5	473	4	1,285	12	922	17	2,545
Polinton	0	0	0	0	0	0	1	55	0	0	0	0
hAT	6	466	6	686	4	416	5	426	13	845	18	1,428
Endogenous retrovirus	2	181	0	0	1	80	0	0	9	809	9	1,118
ERV1	2	181	0	0	0	0	0	0	6	573	5	608
ERV2	0	0	0	0	0	0	0	0	2	162	3	410
ERV3	0	0	0	0	1	80	0	0	1	74	1	100
LTR retrotransposon	1	93	1	38	3	571	12	2,217	0	0	2	233
DIRS	0	0	1	38	1	102	2	153	0	0	0	0
Gypsy	1	93	0	0	2	469	9	2,020	0	0	2	233
Non-LTR retrotransposon	16	2,648	17	4,784	19	3,304	49	11,912	25	4,270	33	4,864
CR1	3	598	5	3,666	2	484	10	3,601	2	258	9	2,042
L1	3	282	2	99	0	0	8	792	1	72	3	203
L2	2	353	4	403	3	197	12	2,398	3	212	5	911
Penelope	0	0	1	208	4	808	1	117	2	163	3	231
R4	0	0	0	0	3	693	10	4,020	0	0	0	0
RTE	3	557	0	0	0	0	1	29	5	1,979	1	63
RTEX	0	0	0	0	0	0	1	127	0	0	0	0
Rex1	0	0	0	0	0	0	1	510	1	55	0	0
SINE	5	858	5	408	7	1,122	4	246	9	1,380	11	1,299
SINE2/tRNA	4	549	4	327	4	632	4	246	5	397	7	937
SINE3/5S	0	0	0	0	1	80	0	0	1	150	1	81
Tx1	0	0	0	0	0	0	1	72	1	53	0	0
Vingi	0	0	0	0	0	0	0	0	0	0	1	115
Total	30	5,199	26	5,770	34	4,979	75	16,152	63	7,292	81	10,298
% of total sequence		9.8		14.2		8.4		19.5		8.0		15.4