. Author manuscript; available in PMC: 2014 Oct 27.

Published in final edited form as: Clin Cancer Res. 2008 Jul 15;14(14):4572–4583. doi: 10.1158/1078-0432.CCR-07-5090

Table 3.

Regions identified that contain genes with known alterations in human cancer

Region	Genes
Amplifications
1q21-q44	ABL2, FCGR2B, FH, HRPT2, IRTA1, PBX1, SDHC, TPR
2p24	MYCN
2p24-p16	ALK, BCL11A, MSH2, MSH6
3q27-q27	EIF4A2
7p21-p11	HOXA13, JAZF1, ZNFN1A1
7q31-q35	BRAF, TIF1
8q11-q22	NBS1, NCOA2, PLAG1
8q24-q24	EXT1
12p13-p12	HIST1H4I, CCND2, ETV6, KRAS
12q14-q15	HMGA2
13q14	FOXO1A
14q11	TCR-α
17q21-q25	BRIP1, CLTC, COL1A1, HLF, MSI2, PRKAR1A
20q11-q13	GNAS
Deletions
1p36-p36	PAX7, PRDM16
9p21	CDKN2A/2B
14q11	TCR-α