Table 1.
FeII | MnII | ||||
Unligated* | NO | CO* | Unligated* | NO* | |
Data collection | |||||
Wavelength, Å | 1.00 | 1.11 | 1.00 | 1.00 | 1.00 |
Space group | P6322 | P21212 | P6322 | P6322 | P6322 |
Cell dimensions | |||||
a, b, c; Å | 164.0, 164.0, 101.7 | 67.6, 86.7, 33.8 | 164.2, 164.2, 102.4 | 163.8, 163.8, 102.0 | 164.3, 164.3, 101.7 |
α, β, γ; ° | 90, 90, 120 | 90, 90, 90 | 90, 90, 120 | 90, 90, 120 | 90, 90, 120 |
Resolution, Å | 47.88–2.00 | 33.82–1.65 | 43.01–2.25 | 48.02–2.10 | 47.88–2.45 |
(2.05–2.00) | (1.74–1.65) | (2.32–2.25) | (2.16–2.10) | (2.55–2.45) | |
Redundancy | 7.6 (6.0) | 3.9 (3.3) | 11.1 (11.1) | 4.8 (2.4) | 10.7 (11.0) |
Completeness, % | 99.6 (97.9) | 99.7 (99.5) | 97.4 (98.1) | 98.5 (98.6) | 100.0 (100.0) |
Rp.i.m.,† % | 2.1 (61.8) | 2.8 (41.8) | 2.8 (44.6) | 3.2 (65.5) | 3.2 (66.3) |
I/σ | 20.8 (1.4) | 14.4 (1.7) | 20.2 (1.8) | 12.8 (1.1) | 19.3 (1.6) |
CC1/2 | 99.9 (55.5) | 99.9 (68.7) | 99.9 (64.4) | 99.9 (74.2) | 99.9 (52.7) |
Refinement | |||||
Molecules in ASU | 2 | 1 | 2 | 2 | 2 |
Rwork/Rfree, % | 17.2/19.1 | 16.8/20.3 | 18.2/19.3 | 17.1/19.7 | 18.2/20.7 |
Ramachandran | |||||
Favored, % | 96.8 | 97.2 | 96.2 | 96.8 | 96.0 |
Outliers, % | 0 | 0 | 0 | 0 | 0 |
B factors, Å2 | |||||
Overall | 61.65 | 34.52 | 66.21 | 63.34 | 73.76 |
Protein | 56.60 | 31.14 | 60.81 | 58.14 | 67.54 |
Heme/MnPPIX‡ | 37.06 (A) | 20.69 | 41.86 (A) | 41.41 (A) | 48.06 (A) |
50.05 (B) | 52.26 (B) | 54.43 (B) | 63.32 (B) | ||
Gas ligands§ | — | 26.58 (N) | 58.71 (C) | — | 47.78 (N) |
26.04 (O) | 67.34 (O) | 70.23 (O) | |||
Zinc‡ | 35.58 (A) | 20.46 | 39.37 (A) | 41.91 (A) | 47.63 (A) |
44.79 (B) | 48.08 (B) | 51.83 (B) | 55.99 (B) | ||
Gas ligand RSR¶ | — | 0.12 (0.11) | 0.25 (0.16) | — | 0.25 (0.17) |
rmsd | |||||
Bond lengths, Å | 0.005 | 0.019 | 0.009 | 0.021 | 0.022 |
Bond angles, ° | 0.865 | 0.864 | 0.887 | 1.650 | 1.643 |
MolProbity score | 1.03 | 1.20 | 1.41 | 1.34 | 1.31 |
Unless otherwise noted, values in parentheses correspond to the highest resolution shell. CC1/2, Pearson's correlation coefficient between average intensities of random half datasets for each unique reflection (51).
Denotes the 154AAA mutant of So H-NOX.
Calculated using .
Corresponding molecule in asymmetric unit (ASU) is listed in parentheses.
Corresponding gas atom is listed in parentheses.
Real-space R-value (RSR) for the gas ligand and porphyrin (listed in parentheses).