Table 3.

The four haplotypes observed with the SINE insertion (top), the 22 haplotypes that include the C allele of intron 1 (bottom) and the number of observations in each breed.

Each locus is named using the AB notation from the Illumina BeadChip with the exception of the MSTN Intron 1 SNP, which is designated for the SNP (T or C) and the SINE insertion where S indicates presence of the SINE and N indicates its absence. “·” indicates the same allele as the most common haplotype (Hap1). Note that the four SINE haplotypes are duplicated in the lower portion of the table as they also contain the intron 1 C allele.