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. 2014 Sep 24;15(9):457. doi: 10.1186/s13059-014-0457-4

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© Formey et al.; licensee BioMed Central Ltd. 2014

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Heatmaps of differential ly expressed miRNAs from different organs of M. truncatula. (a,b) Heat maps from root libraries versus leaf library (a) and root libraries versus root apex libraries (b). Each column corresponds to the different libraries. miRNA IDs are indicated on the right of the diagram and each row indicates a miRNA. Color gradients indicate the expression level from green (low) to red (high) according to read numbers. miRNAs were declared as differentially expressed if the adjusted treatment P-value was <1 × 10^-3. P-values were adjusted to control the false discovery rate using the Benjamini-Hochberg method. Clustering was based on Pearson correlation coefficient and 'average' algorithm. Dis., Disease library; S.m., Sinorhizobium meliloti; R.i., Rhizophagus irregularis.