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. 2014 Oct 30;9(10):e110834. doi: 10.1371/journal.pone.0110834

Table 1. Primers used in this study.

Primer Oligonucleotide sequence Reference
NS1 5′-GTAGTCATATGCTTGTCTC-3′ [22] a
NS8 5′-TCCGCAGGTTCACCTACGGA-3′
Cu I 5′-CAYTGGCAYGGNTTYTTYCA-3′ [29] b
Cu IV 5′-TGVHARTCDATRTGRCARTG-3′
LacA SP1 5′- CGACATCATAGAGAGCCTTGTGCGGA -3′ This studyc
LacA SP2 5′- TCAGTGGGATCGTAGACAACAAAGGCA -3′
LacA SP3 5′- AGATGGGGCACTGGTTCACGA -3′
LacA SP4 5′- TCTGGCTCCGTCATTACCCTTCCCATC -3′
LacA SP5 5′- AGACCATTGAACTTACCCTTGCAGCG -3′
LacA SP6 5′- GGTCAAACTACTCCCAACTACG -3′
AD1 5′- TGWGNAGWANCASAGA-3′ [30] d
AD2 5′-AGWGNAGWANCAWAGG-3′
AD3 5′-STTGNTASTNCTNTGC-3′
AD4 5′-NTCGASTWTSGWGTT -3′
AD5 5′-NGTCGASWGANAWGAA -3′
AD6 5′-WGTGNAGWANCANAGA -3′
AD7 5′-WTCTGNCTWANTANCT-3′
LacA GSP1 5′-GGTAGCGATGCCGAATGAGGG-3′ This studye
LacA GSP2 5′- AGATGGGGCACTGGTTCACGA -3′
SFP1 5′-CACGACACGCTACTCAACACACCA-3′ [31] f
SFP2 5′-AACACACCACCTCGCACAGC-3′
SiteFinder1 5′-CACGACACGCTACTCAACACACCACCTCGCACAGCGTCCAAGCGGCCGCNNNNNNGCCT-3′
SiteFinder2 5′-CACGACACGCTACTCAACACACCACCTCGCACAGCGTCCAAGCGGCCGCNNNNNNGCGC-3′
LacA-RT-1 5′- ATGGCATTCCGTTCAGGC -3′ This studyg
LacA-RT-2 5′- TTACTTGTCACCATCAGCAAGA -3′
R = A/G, Y = C/T, M = A/C, K = G/T, S = G/C, W = A/T, H = A/T/C, D = G/A/T, B = G/T/C, V = G/A/C, N = A/T/G/C.
a

Universal primers for amplification of 18S rDNA.

b

Degenerate primers for amplification of the laccase sequence spanning the first and the fourth copper-binding motifs.

c

Gene-specific primers for TAIL-PCR to amplify the 5′- and 3′-flanking sequences of the laccase fragment obtained with primers Cu I and Cu IV.

d

Arbitrary degenerate primers for TAIL-PCR.

e

Gene-specific primers for SiteFinding PCR to amplify the LacA promoter sequence.

f

SiteFinders and their primers (SFP1 and SFP2) for SiteFinding PCR.

g

Primers for amplification of the cDNA sequence of LacA.