Table 1. Primers used in this study.
Primer | Oligonucleotide sequence | Reference |
NS1 | 5′-GTAGTCATATGCTTGTCTC-3′ | [22] a |
NS8 | 5′-TCCGCAGGTTCACCTACGGA-3′ | |
Cu I | 5′-CAYTGGCAYGGNTTYTTYCA-3′ | [29] b |
Cu IV | 5′-TGVHARTCDATRTGRCARTG-3′ | |
LacA SP1 | 5′- CGACATCATAGAGAGCCTTGTGCGGA -3′ | This studyc |
LacA SP2 | 5′- TCAGTGGGATCGTAGACAACAAAGGCA -3′ | |
LacA SP3 | 5′- AGATGGGGCACTGGTTCACGA -3′ | |
LacA SP4 | 5′- TCTGGCTCCGTCATTACCCTTCCCATC -3′ | |
LacA SP5 | 5′- AGACCATTGAACTTACCCTTGCAGCG -3′ | |
LacA SP6 | 5′- GGTCAAACTACTCCCAACTACG -3′ | |
AD1 | 5′- TGWGNAGWANCASAGA-3′ | [30] d |
AD2 | 5′-AGWGNAGWANCAWAGG-3′ | |
AD3 | 5′-STTGNTASTNCTNTGC-3′ | |
AD4 | 5′-NTCGASTWTSGWGTT -3′ | |
AD5 | 5′-NGTCGASWGANAWGAA -3′ | |
AD6 | 5′-WGTGNAGWANCANAGA -3′ | |
AD7 | 5′-WTCTGNCTWANTANCT-3′ | |
LacA GSP1 | 5′-GGTAGCGATGCCGAATGAGGG-3′ | This studye |
LacA GSP2 | 5′- AGATGGGGCACTGGTTCACGA -3′ | |
SFP1 | 5′-CACGACACGCTACTCAACACACCA-3′ | [31] f |
SFP2 | 5′-AACACACCACCTCGCACAGC-3′ | |
SiteFinder1 | 5′-CACGACACGCTACTCAACACACCACCTCGCACAGCGTCCAAGCGGCCGCNNNNNNGCCT-3′ | |
SiteFinder2 | 5′-CACGACACGCTACTCAACACACCACCTCGCACAGCGTCCAAGCGGCCGCNNNNNNGCGC-3′ | |
LacA-RT-1 | 5′- ATGGCATTCCGTTCAGGC -3′ | This studyg |
LacA-RT-2 | 5′- TTACTTGTCACCATCAGCAAGA -3′ | |
R = A/G, Y = C/T, M = A/C, K = G/T, S = G/C, W = A/T, H = A/T/C, D = G/A/T, B = G/T/C, V = G/A/C, N = A/T/G/C. |
Universal primers for amplification of 18S rDNA.
Degenerate primers for amplification of the laccase sequence spanning the first and the fourth copper-binding motifs.
Gene-specific primers for TAIL-PCR to amplify the 5′- and 3′-flanking sequences of the laccase fragment obtained with primers Cu I and Cu IV.
Arbitrary degenerate primers for TAIL-PCR.
Gene-specific primers for SiteFinding PCR to amplify the LacA promoter sequence.
SiteFinders and their primers (SFP1 and SFP2) for SiteFinding PCR.
Primers for amplification of the cDNA sequence of LacA.