TABLE 3.
Downstream analysis of the genes ending with TGA in Mycoplasma and Ureaplasma sp.
The bacterial strains and the locus tags for the genes in Mycoplasma and Ureaplasma that show a reannotated TGA terminating codon are listed. Interestingly, most of the genes except the hypothetical proteins have either TAA or TAG stop codons immediately following the TGA codon.
| Locus tag | Bacterial strain | Codon following TGA |
|---|---|---|
| MCAP_0107 | Mycoplasma capricolum subsp. capricolum California kid ATCC 27343 | TAA |
| MCAP_0152 | M. capricolum subsp. capricolum California kid ATCC 27343 | TAA |
| MCAP_0216 | M. capricolum subsp. capricolum California kid ATCC 27343 | TAA |
| MCAP_0246 | M. capricolum subsp. capricolum California kid ATCC 27343 | Hypothetical protein |
| MCAP_0458 | M. capricolum subsp. capricolum California kid ATCC 27343 | TAA |
| MCAP_0466 | M. capricolum subsp. capricolum California kid ATCC 27343 | TAA |
| MCAP_0486 | M. capricolum subsp. capricolum California kid ATCC 27343 | Hypothetical protein |
| MCAP_0543 | M. capricolum subsp. capricolum California kid ATCC 27343 | TAA |
| MCAP_0677 | M. capricolum subsp. capricolum California kid ATCC 27343 | TAA |
| MCAP_0682 | M. capricolum subsp. capricolum California kid ATCC 27343 | TAA |
| MCAP_0683 | M. capricolum subsp. capricolum California kid ATCC 27343 | TAG |
| MCAP_0825 | M. capricolum subsp. capricolum California kid ATCC 27343 | TAG |
| MGA_0732 | Mycoplasma gallisepticum strain R | TAA |
| MGA_0733 | M. gallisepticum strain R | TAG |
| MGA_0740 | M. gallisepticum strain R | TAA |
| MGA_0928 | M. gallisepticum strain R | TAA |
| MGA_0323 | M. gallisepticum strain R | Hypothetical protein |
| MGA_0333 | M. gallisepticum strain R | Hypothetical protein |
| MG_007 | Mycoplasma genitalium G-37 | TAG |
| MG_045 | M. genitalium G-37 | Hypothetical protein |
| MG_164 | M. genitalium G-37 | TAA |
| MG_441 | M. genitalium G-37 | Hypothetical protein |
| MYPE190 | Mycoplasma penetrans HF-2 | Hypothetical protein |
| MYPE1240 | M. penetrans HF-2 | Hypothetical protein |
| MYPE1390 | M. penetrans HF-2 | TAA |
| MYPE1820 | M. penetrans HF-2 | TAA |
| MYPE2070 | M. penetrans HF-2 | TAA |
| MYPE3180 | M. penetrans HF-2 | TAG |
| MYPE4880 | M. penetrans HF-2 | Hypothetical protein |
| MYPE4910 | M. penetrans HF-2 | Hypothetical protein |
| MYPE5350 | M. penetrans HF-2 | Hypothetical protein |
| MYPE5400 | M. penetrans HF-2 | Hypothetical protein |
| MYPE5660 | M. penetrans HF-2 | Hypothetical protein |
| MYPE5730 | M. penetrans HF-2 | TAA |
| MYPE8180 | M. penetrans HF-2 | TAA |
| MYPE8700 | M. penetrans HF-2 | TAG |
| MYPE8790 | M. penetrans HF-2 | Hypothetical protein |
| MYPE9780 | M. penetrans HF-2 | Hypothetical protein |
| MYPE10030 | M. penetrans HF-2 | TAG |
| MYPE10040 | M. penetrans HF-2 | TAG |
| MPN007 | Mycoplasma pneumoniae M129 | TAA |
| MPN058 | M. pneumoniae M129 | Hypothetical protein |
| MPN178 | M. pneumoniae M129 | TAA |
| MPN286 | M. pneumoniae M129 | Hypothetical protein |
| MPN40 | M. pneumoniae M129 | TAA |
| MPN458 | M. pneumoniae M129 | Hypothetical protein |
| MPN589 | M. pneumoniae M129 | Hypothetical protein |
| MYPU_0720 | Mycoplasma pulmonis UAB CTIP | Hypothetical protein |
| MYPU_1170 | M. pulmonis UAB CTIP | TAA |
| MYPU_1190 | M. pulmonis UAB CTIP | Hypothetical protein |
| MYPU_1850 | M. pulmonis UAB CTIP | TAA |
| MYPU_2030 | M. pulmonis UAB CTIP | TAA |
| MYPU_2550 | M. pulmonis UAB CTIP | Hypothetical protein |
| MYPU_3390 | M. pulmonis UAB CTIP | TAG |
| MYPU_4290 | M. pulmonis UAB CTIP | TAA |
| MYPU_5680 | M. pulmonis UAB CTIP | TAA |
| MYPU_5730 | M. pulmonis UAB CTIP | TAG |
| MYPU_5740 | M. pulmonis UAB CTIP | TAG |
| MYPU_7200 | M. pulmonis UAB CTIP | TAG |
| UU037 | Ureaplasma urealyticum parvum biovar serovar 3 | Hypothetical protein |
| UU074 | U. urealyticum parvum biovar serovar 3 | TAA |
| UU156 | U. urealyticum parvum biovar serovar 3 | Hypothetical protein |
| UU244 | U. urealyticum parvum biovar serovar 3 | TAG |
| UU245 | U. urealyticum parvum biovar serovar 3 | TAA |
| UU250 | U. urealyticum parvum biovar serovar 3 | TAG |
| UU524 | U. urealyticum parvum biovar serovar 3 | TAA |
| UU548 | U. urealyticum parvum biovar serovar 3 | TAA |