Table 4.
Homology of Hva transcript datasets to Pucciniales predicted proteins.
| Hva urediniospore transcripts | ||||
|---|---|---|---|---|
| Hva samplesa | Assmbled transcripts | HvCatNor | HvH420_701 | HvCat955 |
| I | ||||
| Hva (gU) | 4267 | 91.0% (3884) | 93.1% (3973) | 93.9% (4007) |
| H. vastatrix (Ap) | 3627 | 59.2% (2147) | 63.1% (2290) | 63.8% (2315) |
| H. vastatrix (H) | 4465 | 50.0% (2232) | 49.1% (2202) | 49.6% (2229) |
| Rust species | Predicted proteins | |||
| II | ||||
| Pt | 11,630 | 42.2% (18,703) | 40.0% (22,240) | 36.6% (23,705) |
| Pgt | 15,979 | 43.8% (19,411) | 41.5% (23,129) | 37.8% (24,480) |
| Pst | 22,815 | 43.5% (19,257) | 40.4% (22,544) | 36.9% (23,874) |
| Mlp | 16,694 | 39.2% (17,385) | 40.8% (22,765) | 37.8% (21,302) |
I. Homology sequence analysis between Hva transcriptomes datasets (this study) and Hva germinating urediniospores, appresoria, and haustoria transcript sequences (gU, Ap, H, Talhinhas et al., 2014) was performed with the program BLASTn and an E = 1e−20. II. BLASTx sequence similarity analysis of H. vastatrix RNA-seq sequences and other rust predicted protein datasets (E = 1e−3). Numbers represent fraction (%) of hits found.
a
Hva samples described in Fernandez et al. (2012).