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. 2014 Oct 31;9(10):e109678. doi: 10.1371/journal.pone.0109678

Figure 4. Phylogenetic and Poisson-Fitter analysis of DF38 macaque env sequences.

Figure 4

In total 21 full-length env sequences were analyzed to identify the T/F virus from DF38. (A) Phylogenetic tree of DF38 full-length envelope sequences compared to derived DF38 consensus sequence. (B) Highlighter plot showing variations in nucleotides and APOBEC mutations in individual nucleotide sequences in comparison to DF38 consensus sequence. (C) Poisson-Fitter plots of DF38 env sequences including APOBEC mutations. (D) Poisson-Fitter plots of DF38 env sequences excluding the APOBEC mutations.