TABLE 1.
Gene | Primer | Primer sequence (5′ to 3′) | Gene location | Amplicon Size (bp) |
---|---|---|---|---|
ompA | Nlo | ATGAAAAAACTCTTGAAATCG | 1 to 21a | 1,129 |
Nro | CTCAACTGTAACTGCGTATTT | 1128 to 1108a | ||
ompA | Pctm3 | TCCTTGCAAGCTCTGCCTGTGGGGAATCCT | 55 to 84a | 1,014 |
Sero2A | TTTCTAGATTTCATTTTGTT | 1068 to 1049a | ||
ompA | OmpA-3b | CCTGCTGAACCAAGCCTTATG | 82 to 102a | |
ompA | OmpA-4b | CCAATATGCTCAATCTAAACC | 639 to 659a | |
pmpC | C-9b | GCTGGTCAAGTTATCTGCGGAGTG | −344 to −321d | 3,015 |
C-10b | TATTCCCGGAGAAGGTGACAGTTC | 2671 to 2648c | ||
pmpC | C-11b | TGGAGATAGCGCTGGAGACTCTGA | 2394 to 2417c | 3,115 |
C-12b | GTTAACGCGTACCGAGGGTTCG | |||
pmpC | C-7b | AGACAACACAGAGTATCGAG | 153 to 172c | |
pmpC | C-5b | ATAACTACTCCCCCTCTCATAGGA | 1156 to 1179c | |
pmpC | C-4b | GGGGGTAGAAGATTCTGGGGTATC | 1362 to 1339c | |
pmpC | C-8b | CTTATCCCACTATAACTCTG | 1713 to 1732c | |
pmpC | C-15b | ACTCTCCTACTGTAACCATTG | 2720 to 2740c | |
pmpC | C-17b | AACAGGTACACAGGCAACTG | 3450 to 3469c | |
pmpC | C-16b | TGACGGATACTGGAGTATTC | 4940 to 4921c | |
pmpH | H-1b | TCGGGCATTCAGGAGTGGACAT | −367 to −346e | 776 |
H-2 | CTTCGCCTGCTCCGGAAATACTC | 408 to 386e | ||
pmpI | I-1 | GAGGCGATTCTTTGCTGCTACTT | 1095 to 1117f | 1,369 |
I-2b | AACAAACCAACCCAAAACTAAAAT | −273 to −250f |
Primers designed based on the sequence of strain L2 ompA.
Primers used for automated sequencing.
Primers designed based on the sequence of strain D pmpC.
−, a region upstream from the start codon.
Primers designed based on the sequence of strain D pmpH.
Primers designed based on the sequence of strain D pmpI.