TABLE 1.
Potential light-color-responsive clones
| Group and clonea | Array result
|
RL RNA intensity | GL RNA intensity | Length (bp) | No. of ORFs | Slot blot result
|
||
|---|---|---|---|---|---|---|---|---|
| FIb | SE | FIb | SE | |||||
| GL | ||||||||
| 3091F11A | 1.74 | 0.06 | 1,719 | 2,786 | 4,134 | 6 | 3.33 | 0.12 |
| 3097E11A | 1.73 | 0.06 | 368 | 626 | 3.00 | 0.1 | ||
| 3102C5A | 1.74 | 0.06 | 1,413 | 2,116 | 1.89 | 0.24 | ||
| 3107A11A | 1.64 | 0.05 | 1,557 | 2,433 | 2.29 | 0.08 | ||
| 3087C3B | 1.63 | 0.1 | 476 | 804 | 5,146 | 6 | 1.20 | 0.43 |
| 3091E9B | 1.70 | 0.06 | 637 | 1,234 | 1.04 | 0.29 | ||
| 3095H1B | 1.52 | 0.09 | 549 | 981 | 1.67 | 0.20 | ||
| 3087B6C | 1.57 | 0.06 | 5,275 | 7,421 | 4,166 | 4 | 1.13 | 0.04 |
| 3087B9C | 1.86 | 0.06 | 2,411 | 5,799 | 1.13 | 0.06 | ||
| 3087E2E | 3.34 | 0.03 | 2,638 | 10,702 | 6,485 | 7 | 7.69 | 0.02 |
| 3090A5E | 7.59 | 0.02 | 3,379 | 21,956 | 8.130 | 0.04 | ||
| 3101C7F | 1.60 | 0.11 | 414 | 937 | 3,861 | 5 | 2.99 | NAc |
| 3101F11F | 1.59 | 0.09 | 587 | 1,009 | 1.48 | 0.30 | ||
| 3102F8F | 1.53 | 0.1 | 485 | 868 | 2.02 | 0.23 | ||
| 3085B1 | 1.52 | 0.09 | 748 | 988 | 3,717 | 3 | 2.04 | NA |
| 3088E12 | 2.13 | 0.09 | 338 | 1,097 | 3,135 | 4 | 1.67 | 0.16 |
| 3091A7 | 1.59 | 0.05 | 1,494 | 2,757 | 3,210 | 2 | 1.01 | 0.23 |
| 3091B3 | 1.60 | 0.09 | 698 | 1,807 | 3,825 | 1 | 3.61 | 0.09 |
| 3092A8 | 1.80 | 0.07 | 1,018 | 1,980 | 4,096 | 2 | 1.35 | 0.36 |
| 3092A9 | 1.50 | 0.06 | 1,745 | 2,920 | 7,835 | 6 | 2.88 | 0.15 |
| 3093E3 | 1.90 | 0.03 | 2,089 | 4,336 | 3,501 | 3 | 2.16 | 0.27 |
| 3094E9 | 1.71 | 0.04 | 1,520 | 2,552 | 7,501 | 7 | 2.50 | 0.06 |
| 3098E8 | 1.52 | 0.06 | 2156 | 3,335 | 3,478 | 5 | 2.16 | 0.27 |
| 3104G9 | 1.60 | 0.04 | 1034 | 1,882 | 3,839 | 3 | 1.76 | 0.30 |
| 3106E11 | 1.64 | 0.07 | 1076 | 2,315 | 5,596 | 4 | 1.72 | 0.54 |
| 3109A9 | 1.72 | 0.05 | 742 | 1,282 | 5,834 | 6 | 1.53 | 0.14 |
| cpeBA | 3.41 | 0.05 | 19,004 | 64,208 | 1,100 | 2 | —d | |
| cpeCDE | 14.76 | 0.01 | 1,681 | 32,971 | 3,500 | 3 | — | |
| RL | ||||||||
| 3104H2D | 2.48 | 0.28 | 14,332 | 5,093 | 4,623 | 5 | 1.11 | 0.14 |
| 3104H3D | 1.98 | 0.14 | 18,783 | 8,561 | 0.41 | 0.09 | ||
| 3084A10 | 1.98 | 0.22 | 10,139 | 5,660 | 1,504 | 2 | NDe | NA |
| 3092E12 | 5.98 | 1.42 | 11,029 | 1,289 | 1,745 | 5 | 2.74 | 0.44 |
| 3092A2 | 1.53 | 0.22 | 7,270 | 4,727 | 6,688 | 7 | 1.10 | 0.31 |
| 3092F10 | 1.95 | 0.24 | 4,996 | 3,235 | 4,143 | 4 | 1.29 | 0.36 |
| 3095F6 | 1.92 | 0.15 | 2,077 | 1,107 | 6,075 | 3 | 0.84 | 0.13 |
| 3098H5 | 1.73 | 0.39 | 1,159 | 518 | 4,714 | 4 | 1.22 | 0.66 |
| 3101B8 | 1.69 | 0.09 | 973 | 563 | 6,912 | 5 | 1.54 | 0.43 |
| 3101D4 | 1.57 | 0.11 | 3,379 | 1,941 | 2,714 | 2 | 0.72 | 0.19 |
| 3104F2 | 1.85 | 0.12 | 2,798 | 1,566 | 3,620 | 3 | 2.07 | 0.95 |
| 3105B10 | 2.22 | 0.13 | 4,780 | 2,112 | 3,222 | 3 | 2.00 | 0.49 |
| 3106A6 | 2.73 | 0.50 | 3,373 | 1,232 | 3,843 | 3 | 1.24 | 0.32 |
| 3106F10 | 1.57 | 0.14 | 2,618 | 1,657 | 6,465 | 2 | 1.50 | 0.58 |
| 3107H12 | 1.87 | 0.12 | 2,776 | 1,528 | 2,805 | 3 | 1.38 | 0.01 |
| 3109D10 | 1.89 | 0.22 | 1,094 | 545 | 4,544 | 5 | 1.07 | 0.12 |
| cpc2 | 24.07 | 2.73 | 38,714 | 2,139 | 1,400 | 2 | — | |
| cpc1 | 1.17 | 0.18 | 12,058 | 11,661 | 3,500 | 4 | — | |
| apcAB | 1.38 | 0.02 | 9,979 | 7,331 | 600 | 1 | — | |
a
Clones were selected as described in the text. Roman capitalized superscript characters indicate group affiliations. All members of a group are clustered within the table. Control genes cpeBA, cpeCDE, cpc1, cpc2, and apcAB were included for comparison.
b
FI (fold induction) values were determined by dividing RL intensity by GL intensity for RL-induced genes and GL intensity by RL intensity for GL-induced genes. For control genes apcAB and cpc1, FI values are given as RL intensity divided by GL intensity.
c
NA, not available.
d
—, control genes were not analyzed by slot blotting in this series of experiments. See reference 57 for details of their expression characteristics.
e
ND, not done.