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. 2004 Jul;186(13):4338–4349. doi: 10.1128/JB.186.13.4338-4349.2004

TABLE 2.

Seventeen novel F. diplosiphon genes regulated by light color

Light response category and gene or groupa Subarray result
Product size (bp) Avg RL intensity Avg GL intensity Northern blotting result
tc nd
FIb SE FIb SE
GL
    3088E12-C 1.56 0.09 357 1,843 3,128 1.76 0.12 3.60 6
    3091A7-A 1.24 0.05 1,641 9,036 11,525 1.63 0.07 5.58 3
    3104G9-B 1.79 0.04 338 3,009 5,688 1.39 0.11 2.59 5
    3109A9-C 1.32 0.03 806 4,630 5,995 2.24 0.07 7.59 6
    Group A-C 1.36 0.05 309 16,584 22,219 2.00 0.08 5.83 5
    Group A-D 1.33 0.04 267 9,789 13,046 1.92 0.09 9.55 4
    Group C-E 1.71 0.04 849 11,324 17,906 2.18 0.11 5.10 5
    Group E-A 2.66 0.04 553 3,884 12,440 6.54 0.04 23.87 6
    Group E-B 2.05 0.06 271 1,495 2,896 5.81 0.05 16.79 6
    Group E-G #e 7.52 0.05 19.39 5
    cpeBA 11.4 0.02 1,100 6,103 56,877 f
    cpeCDE 5.127 0.05 3,500 10,662 54,176
    cpeSTR 2.77 0.05 3,000 8,591 16,735
RL
    3091A7-B 1.33 0.10 605 1,816 1,534 2.09 0.41 2.67 4
    3092A9-C 1.27 0.07 1,591 2,908 2,524 2.27 0.58 2.19 4
    3098H5-C 1.30 0.12 497 1,626 1,426 1.74 0.36 2.07 6
    3105B10-A 1.55 0.18 1,595 1,621 1,237 2.05 0.09 11.72 4
    3106A6-A 1.27 0.05 2,020 6,715 5,971 1.91 0.33 2.77 4
    3106F10-A 1.37 0.10 1,932 2,445 2,221 1.98 0.31 3.14 4
    3106F10-B 1.33 0.23 2,794 1,793 1,688 1.54 0.23 2.34 5
    cpc2 11.99 1.95 1,400 59,661 6,511
Nonresponsive
    apcAB 0.89 0.02 600 4,932 6,132
    cpc1 0.98 0.10 3,500 4,949 5,280
a

Control genes cpeBA, cpeCDE, cpc1, cpc2, and apcAB were included for comparison.

b

FI (fold induction) values were determined by dividing RL intensity by GL intensity for RL-induced genes and GL intensity by RL intensity for GL-induced genes. For control genes apcAB and cpc1, FI values are given as RL intensity divided by GL intensity.

c

t, absolute value from a Student's one-tailed t test.

d

n, number of biological replicates for the Northern blot analysis.

e

#, ORF group E-G is a homologue of Nb1A and was not printed on the subarrays.

f

—, control genes were not analyzed by Northern blotting in this series of experiments. See reference 57 for details of their expression characteristics.