TABLE 3.
Frequencies of SNPs
| Gene | SNP | Position no. | Enzyme | % of strains the same as PAO1a | % of strains not the same as PAO1b |
|---|---|---|---|---|---|
| oriC | T→C | 267 | AlwNI | 59 | 41 |
| oprL | T→C | 396 | BstUI | 44 | 56 |
| alkB2 | G→A | 471 | MspA1I | 49 | 51 |
| alkB2 | A→G | 1047 | Fnu4HI | 38 | 62 |
| citS | A→G | 533 | AciI | 69 | 31 |
| citS | G→C | 896 | MnlI | 45 | 55 |
| oprI | T→C | 195 | AciI | 25 | 75 |
| ampC | G→A | 789 | MspI | 79 | 21 |
| ampC | C→T | 883 | MnlI | 80 | 20 |
| ampC | C→T | 1060 | BstUI | 77 | 23 |
| ampC | G→A | 1150 | HinfI | 71 | 29 |
| ampC | G→C | 1166 | AlwNI | 85 | 15 |
| ampC | T→C | 1585 | AgeI | 78 | 22 |
| ampC | C→A | 1639 | BsrI | 35 | 65 |
fliC type b (the same as in PAO1) appeared in 39% of the strains.
fliC type a (not the same as in PAO1) appeared in 61% of the strains.