TABLE 2.
Polymorphisms within VZV intergenic regions
| Dumas
|
MSP
|
BC
|
ORF location | |||
|---|---|---|---|---|---|---|
| Position | Base | Position | Base | Position | Base | |
| 1 | A | 1 | G | 1 | G | |
| 3 | G | 3 | C | 3 | C | |
| 117/8 | 118 | C | 117/8 | |||
| 8589 | T | 8590 | G | 8589 | T | ORFs 6/7 |
| 13458 | G | 13459 | G | 13458 | T | ORFs 10/11 |
| 42403 | A | 42418/19 | 42897/8 | ORFs 22/23 | ||
| 54564 | T | 54579 | C | 55058 | C | ORFs 29/30 |
| 60277 to 9 | AAA | 60291/2 | 60770/1 | |||
| 77898 | T | 77910 | C | 78389 | T | ORFs 42/43 |
| 78144 | T | 78156 | T | 78634/5 | ORFs 42/43 | |
| 101991 | C | 102003 | C | 102481 | T | ORFs 60/61 |
| 102203 | A | 102215 | G | 102693 | G | ORFs 60/61 |
| 102575 | A | 102587 | G | 103065 | A | ORFs 60/61 |
| 102617 | C | 102629 | T | 103107 | C | ORFs 60/61 |
| 102969 | A | 102981 | G | 103459 | A | ORFs 60/61 |
| 104898 | A | 104910 | G | 105388 | G | ORFs 61/62 |
| 105010 | C | 105022 | G | 105500 | G | ORFs 61/62 |
| 105012 | T | 105024 | C | 105502 | C | ORFs 61/62 |
| 105015 | T | 105027 | T | 105505 | C | ORFs 61/62 |
| 105016-7 | CT | 105027/8 | 105505/6 | ORFs 61/62 | ||
| 105054/5 | 105065 | G | 105542/3 | ORFs 61/62 | ||
| 105071 | G | 105082 | G | 105558/9 | ORFs 61/62 | |
| 109253/4 | 109264/5 | 109741 | C | ORFs 62/R4 | ||
| 109907/8 | 109918/9 | 110396 to 110449 | R4/ori, ORF63 | |||
| 110058 | G | 110068/9 | 110600 | G | R4/ori, ORF63 | |
| 110220-9 | TATATATAGA | 110230-1 | TA | 110761/2 | ori (110087-350) | |
| 110369-70 | 110372-3 | AA | 110902-3 | AA | ori/ORF63 | |
| 111561 | T | 111565 | C | 112095 | T | ORFs 63/64 |
| 112198 | G | 112204 | A | 112731 | A | ORF64/ORF65 poly(A) and ORF65 |
| 112931 | T | 112937 | C | 113464 | T | ORFs 65/66 |
| 112960 | T | 112966 | C | 113493 | T | ORFs 65/66 |
| 117699 | C | 117705 | T | 118232 | T | ORF68 and ORF68 poly(A)/ORF69 |
| 117769 | T | 117775-7 | TTT | 118301/2 | ORF68 and ORF68 poly(A)/ORF69 | |
| 118336 | A | 118344 | G | 118868 | A | ORFs 68/69 |
| 119536/7 | 119545-6 | TT | 120069 | T | ORF70 and ori/R4 | |
| 119669-78 | CTATATATAT | 119679-80 | AT | 120201/2 | ori (119547-119810) | |
| 119847 | C | 119848/9 | 120370 | C | ori/R4 | |
| 120651/2 | 120652/3 | 121229 | G | R4/ORF71 | ||
| 124834 | C | 124835 | C | 125411/2 | ORF71/end | |
| 124851/2 | 124853 | C | 125428/9 | ORF71/end | ||
| 124880-2 | AGA | 124882-4 | AGG | 125457 | G | ORF71/end |