TABLE 3.
V3 loop amino acid sequences of patient envelopes
| Sample | Clone | V3 loop sequenceb | Charge |
|---|---|---|---|
| Consensusa | CTRPNNNTRKSIHIGPGRAFYTATGEIIGDIRQAHC | 3 | |
| NA118 | LN9 | CTRPNNNTRKSIHIGPGRAFYATGDIIGDIRQAHC | 3 |
| LN27 | ----------------------------------- | 3 | |
| LN33 | ----------------------------------- | 3 | |
| B12 | CTRPNNNTRKSIHIGPGRAFYATGDIIGDIRQAHC | 3 | |
| B18 | ----------------------------------- | 3 | |
| B44 | ----------------------------------- | 3 | |
| B45 | ------------P-----------E---------- | 3 | |
| NA420 | LN40 | CTRPNNNTRKSIHLGPGRAFYTTGEITGDIRQAHC | 3 |
| LN85 | ----------------------------------- | 3 | |
| B3 | CTRPNNNTRKSINLGPGRALYTTGEITGDIRQAHC | 3 | |
| B13 | -------------------F------I-------- | 3 | |
| B33 | ----------------------------------- | 3 | |
| B42 | --------------------------I-------- | 3 | |
| NA20 | B59 | CTRPNNNTRKSIHLGPGSAFYTTGQILGDIRQAHC | 3 |
| B76 | -------------M---RV--A--A-T-------- | 4 | |
| NA176 | B72 | CTRPNNNTRKGIHIGPGRAFYTTGEIIGNIRQAHC | 4 |
| B93 | ----------------------------------- | 4 | |
| NA353 | B13 | CTRPNNNTRKGIHIGPGRAFYATGEIIGDIRQAHC | 3 |
| B27 | ----------------------------------- | 3 |
a
Consensus V3 sequence for R5 envelopes (4).
b
Dashes indicate homology.