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. 2014 Nov 1;18(11):741–748. doi: 10.1089/gtmb.2014.0175

Table 2.

Haplotype Analysis of Families Linked to the ATP6V1B1 Gene with P.Ile386Hisfs*56 Mutation

Marker D2S2113 D2S443 D2S2604 ATP6V1B1 D2S1581E D2S291 D2S2977
Physical position (Mb)a 70.52 Mb 70.79 Mb 70.95 Mb 71.19 Mb 71.37 Mb 71.93 Mb 72.12 Mb
Families with p.Ile386Hisfs*56 founder mutation dRTA-3-1 200 236 246 p.Ile386Hisfs*56 528 186 232
  200 236 246 p.Ile386Hisfs*56 528 186 232
dRTA-4-1 198 236 246 p.Ile386Hisfs*56 528 186 236
  198 236 246 p.Ile386Hisfs*56 528 186 236
dRTA-5-1 198 236 246 p.Ile386Hisfs*56 528 186 232
  198 236 246 p.Ile386Hisfs*56 528 186 232
dRTA-11-1 198 246 246 p.Ile386Hisfs*56 528 186 236
  198 246 246 p.Ile386Hisfs*56 528 186 232
dRTA-15-1 190 224 246 p.Ile386Hisfs*56 528 186 204
  190 224 246 p.Ile386Hisfs*56 528 186 204
dRTA-19-1 202 236 246 p.Ile386Hisfs*56 528 186 232
  202 236 246 p.Ile386Hisfs*56 528 186 232
dRTA-20-1 192 240 246 p.Ile386Hisfs*56 528 192 224
  192 228 246 p.Ile386Hisfs*56 528 180 212
dRTA-21-1 200 236 246 p.Ile386Hisfs*56 528 186 232
  200 236 246 p.Ile386Hisfs*56 528 186 232
dRTA-25-1 198 236 246 p.Ile386Hisfs*56 528 186 236
  198 236 246 p.Ile386Hisfs*56 528 186 236
dRTA-22-1 200 236 246 p.Ile386Hisfs*56 528 186 232
  188 244 230 - 528 184 228
θ   0.00814 0.00188 - 0.00243 0.00796 0.00796
δ   0.5495       0.8804 0.5338
G   129.019         136.078

The parts of the ancestral haplotype shared homozygously by all patients are indicated in bold and those shared by a subset of patients are indicated in italics.

a

Physical position in Mb obtained from www.ncbi.nlm.nih.gov

Gray Shade: common haplotypes shared between patients.

θ: is the recombination rate between ATP6V1B1 and the markers; δ: The linkage disequilibrium index was calculated using the Bengtsson and Thomson formula (1981) (see Materials and Methods section) and G: is number of generation.