Table 2. Alleles in four strains at the positions of 12 SNPs in form 2.a .
| SNP | SNP | REF/ALT | REF/ALT allele count in strain | |||
|---|---|---|---|---|---|---|
| Position (bp) | Context | Allele | JR2 | St.100 | St14.01 | DVD-s26 |
| 174,943 | CGCGG[A]CACAA | A/C | 50/31 | 18/0 | 0/57 | 0/51 |
| 175,798 | CCACC[A]CACCA | A/G | 38/36 | 40/0 | 0/62 | 0/57 |
| 175,849 | CCAAG[G]CCGAC | G/A | 49/32 | 41/0 | 0/59 | 0/48 |
| 175,901 | ATCTC[T]ACGGC | T/C | 36/37 | 43/0 | 0/67 | 0/62 |
| 176,672 | AGGCC[C]ATCTC | C/A | 34/25 | 33/0 | 0/29 | 1/52 |
| 176,710 | CGAGT[G]GGTTG | G/C | 31/30 | 31/0 | 0/35 | 0/48 |
| 176,906 | GTGTG[C]AAAGA | C/T | 37/38 | 34/0 | 0/78 | 0/76 |
| 176,953 | AGGAG[G]GTTGC | G/A | 39/42 | 49/0 | 0/67 | 0/83 |
| 177,636 | TCATC[G]CGATA | G/A | 48/39 | 28/0 | 0/39 | 0/74 |
| 177,676 | CATCG[T]CAGTG | T/C | 53/40 | 31/0 | 0/58 | 0/76 |
| 178,443 | AGACG[A]CTACC | A/G | 23/15 | 34/0 | 0/55 | 0/56 |
| 178,521 | TACAA[C]AACCT | C/T | 16/17 | 15/0 | 0/40 | 0/47 |
Notes.
a
Form 2 is part of supercontig 1.19 of V. albo-atrum reference strain VaMs102.