Table 1.
Identification of lncRNAs highly co-expressed with known cancer genes.
| CANCER GENE | FUNCTION | DISEASE ASSOCIATIONS | IncRNA | FUNCTION | CORRELATION COEFFICIENT |
|---|---|---|---|---|---|
| PTPRC | Protein tyrosine phosphatase receptor involved in T-cell activation. | Acute lymphoid leukemia | LOC100505812 | Uncharacterized | 0.86215 |
| FLI1 | Transcription factor and proto-oncogene | Ewing sarcoma, ALL | LOC100505812 | Uncharacterized | 0.85744 |
| IKZF1 | Zinc finger transcription factor involved in lymphocyte differentiation | ALL, diffuse large B-cell lymphoma (DLBCL) | LOC100505812 | Uncharacterized | 0.84260 |
| ITGB2-AS1 | Uncharacterized | 0.83235 | |||
| C21orf96 (RUNX1-IT1) | Uncharacterized | 0.82207 | |||
| RBM15 | RNA-binding motif protein | Acute megakaryocytic leukemia | LOC144438 | Uncharacterized | 0.83453 |
| HNRNPA2B1 | Ribonucleoprotein involved in pre-mRNA processing | Prostate cancer | FLJ31306 | Uncharacterized | 0.81977 |
| CNBP | Zinc finger SSDNA and SSRNA-binding protein | Aneurysmal bone cyst | LOC388789 | Uncharacterized | 0.81457 |
| MYD88 | Adapter protein for Toll-like receptor and interleukin-1 (IL-1) signaling | DLBCL | LOC100505812 | Uncharacterized | 0.81449 |
| LCK | Protein tyrosine kinase involved in T-cell development | ALL | ITGB2-AS1 | Uncharacterized | 0.81244 |
| CHN1 | GTPase-activating protein involved in neuronal signal-transduction | Extraskeletal myxoid chondrosarcoma | MEG3 | Potential tumor suppressor that interacts with p53 | 0.81079 |
| WAS | Signal transduction protein possibly involved in actin filament reorganization | Lymphoma | ITGB2-AS1 | Uncharacterized | 0.81049 |