Table 1. Description of different steps of human filtration of pipeline utilized to compare sensitivity/specificity of detection and performance of runtime and computational resources of the simulated reads.
| Quality Filter | Fast Alignment | Data Compression | Sensitive Alignment | Repeat DB | |
| mg_bw2 | yes | bowtie2 | - | - | - |
| mg_bwa | yes | bwa | - | - | - |
| mg_dc | yes | bwa | - | stampy | yes |
| mgall_bw2 | yes | bowtie2 | Yes | stampy | yes |
| mgall_bwa | yes | bwa | Yes | stampy | yes |
Dash (-) represents that the option was not utilized.