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. 2014 Oct 28;14:284. doi: 10.1186/s12870-014-0284-5

Table 2.

Homologies of differentially expressed cDNA-AFLP fragments with known gene sequences in database using BLASTN algorithm along their expression patterns in B-toxic leaves of Citrus grandis and Citrus sinensis

TDF # Size (bp) Homology Organism origin E-value Similarity (%) Genebank ID Ratio of BT/ CK
CG CS
Carbohydrate and energy metabolism
143_2 280 Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit precursor Citrus reticulata 6.00E-49 93% AAG49562.1 0
251_1 329 Photosystem II 32 kDa protein (psbA) Dumortiera hirsuta 1.00E-64 97% AEI72217.1 0
112_2 173 Chloroplast photosystem II oxygen-evolving complex 23 kDa polypeptide Cucumis sativus 1.00E-18 75% ABK55671.1 0 2.9
239_4 223 NifU-like protein Medicago truncatula 3.00E-17 87% XP_003594958.1 0
23_2 253 Glyceraldehyde-3-phosphate dehydrogenase B Arabidopsis thaliana 3.00E-06 84% NP_174996.1 +
6_4 222 Rubisco activase A. thaliana 1.00E-33 94% BAF01986.1 0
249_3 313 Sedoheptulose-1 7-bisphosphatase M. truncatula 2.00E-48 97% XP_003600853.1 + +
235_2 305 ADP-glucose pyrophosphorylase Pisum sativum 5.00E-39 82% CAA69978.1 0
42_1 193 Starch branching enzyme I Ipomoea batatas 1.00E-27 90% BAE96953.1 0
59_2 287 Glucose-1-phosphate adenylyltransferase large subunit 1 A. thaliana 2.00E-32 77% NP_197423.1 0 0
75_2 221 Citrate synthase Citrus maxima 4.00E-34 97% ADZ05826.1 2.8
87_1 224 Pyruvate dehydrogenase E1 component subunit beta M. truncatula 1.00E-26 83% XP_003620963.1 +
33_2 289 Aconitate hydratase 3 Citrus clementina 7.00E-50 94% CBE71057.1 +
161_3 257 2,3-bisphosphoglycerate- independent phosphoglycerate mutase Vitis amurensis 1.00E-40 91% ACI96093.1 +
35_1 160 Plastidial pyruvate kinase 3 A. thaliana 6.00E-21 96% NP_564402.1 0
130_1 272 Aconitate hydratase 1 Citrus clementina 2.00E-31 98% CBE71056.1 0
171_2 328 Protochlorophyllide oxidoreductase C (PORC, AT1G03630) A. thaliana 1.00E-43 89% BAH57125.1 0 0
5_1 192 Cytochrome P450 Citrus sinensis 2.00E-16 63% AAL24049.1 +
76_1 261 Cytochrome P450 like protein A. thaliana 3.00E-29 68% BAE99553.1 +
237_2 258 1,3-beta-D-glucanase GH17_65 Populus tremula × Populus tremuloides 2.00E-31 78% ADW08745.1 0
233_5 216 Alpha-glucan water dikinase 1 A. thaliana 4.00E-14 82% NP_563877.1 + 0
57_3 176 UDP-D-glucuronate 4-epimerase 3 A. thaliana 1.00E-21 90% NP_191922.1 0.3 +
117_2 242 Rubredoxin family protein A. thaliana 8.00E-24 81% NP_568342.1 0
121_1 179 Rieske iron-sulphur protein precursor Pinellia ternata 6.00E-20 86% CAM57108.1 +
Lipid metabolism
10_1 282 Fatty acid hydroperoxide lyase Citrus aurantium 2.00E-41 100% ABI64149.1 0
233_3 217 3-oxoacyl-reductase Zea mays 2.00E-05 85% NP_001167684.1 0
195_1 321 Sugar-dependent1 Arabidopsis lyrata subsp. lyrata 3.00E-28 86% XP_002871068.1 +
8_1 232 Acyl carrier protein 1, chloroplastic-like Vitis vinifera 6.4 42% XP_003631979.1 0.4
194_1 256 Alpha/beta-hydrolase domain-containing protein A. thaliana 2.00E-34 72% NP_181474.2 +
186_4 276 Phospholipase-like protein (PEARLI 4) domain-containing protein A. thaliana 7.00E-10 35% NP_973499.1 +
Nucleic acid metabolism
52_1 248 Spliceosomal protein U1A A. thaliana 1.00E-24 69% NP_182280.1 +
49_1 337 Heat stress transcription factor B-2b M. truncatula 8.00E-32 78% XP_003611134.1 +
72_4 171 Global transcription factor gro + A2 A. thaliana 2.00E-04 69% NP_192575.3 +
120_1 257 IAA13 Solanum lycopersicum 3.00E-30 67% AEX00356.1 3.3
44_1 307 Elongator complex protein 3 A. thaliana 4.00E-53 89% NP_568725.1 +
159_2 366 Flowering time control protein FPA (AT2G43410) A. thaliana 0.14 32% BAH56948.1 +
164_1 285 ABA responsive element-binding protein Solanum torvum 3.00E-10 84% AFA37978.1 + 0
73_2 255 Regulator of ribonuclease-like protein M. truncatula 2.00E-08 83% XP_003593378.1 + +
250_3 305 RNA recognition motif-containing protein A. thaliana 7.00E-31 70% NP_563946.1 0.4 2.7
157_2 256 RNA recognition motif-containing protein A. thaliana 3.00E-28 76% NP_188119.1 0 +
11_1 353 Putative RNA helicase MTR4 A. thaliana 1.00E-44 82% NP_176185.1 0
71_3 209 RNA helicase SDE3 A. thaliana 7.00E-24 71% AAK40099.1 0 0
186_1 395 Chromodomain-helicase-DNA-binding protein M. truncatula 9.00E-56 73% XP_003625728.1 0
108_1 317 Receptor for activated C kinase 1B A. thaliana 3.00E-40 87% NP_175296.1 0
67_4 195 Sequence-specific DNA binding transcription factor A. thaliana 5.2 47% NP_566386.1 0
60_1 333 AT5g24120/MLE8_4 A. thaliana 9.00E-37 63% AAK74018.1 +
10_4 114 GRAS family transcription factor Populus trichocarpa 2.00E-04 78% XP_002310226.1 0
22_3 248 MAF1-like protein Citrus sinensis 2.00E-24 96% AEV43358.1 0
131_1 270 RNA-binding (RRM/RBD/RNP motifs) family protein A. thaliana 7.00E-23 62% NP_171616.1 7.3
104_1 234 Zinc finger CCCH domain-containing protein M. truncatula 1.00E-04 43% XP_003605843.1 0
68_2 217 F14N23.20 A. thaliana 3.00E-27 83% AAD32882.1 0.3
Protein and amino acid metabolism
236_1 312 Translation initiation factor IF-2, chloroplastic (AT1G17220) A. thaliana 4.00E-45 85% BAH20402.1 0
117_4 174 Eukaryotic release factor 1-3 Brassica oleracea var.botrytis 3.00E-22 94% ACZ71035.1 0
93_3 193 EMB1241 A.s lyrata subsp. lyrata 5.00E-09 69% XP_002873846.1 0.4
73_3 201 Ankyrin repeat domain-containing protein M. truncatula 5.00E-19 66% XP_003614004.1 0.2
179_4 274 50S ribosomal protein L15 A. thaliana 1.00E-18 80% NP_189221.1 0
105_1 216 30S ribosomal protein S17 M. truncatula 0.005 89% XP_003604547.1 0 0
99_6 165 60S ribosomal protein L6, putative A. thaliana 2.00E-18 93% AAM65875.1 0
186_2 224 60S ribosomal protein L4-1 A. thaliana 3.00E-52 90% NP_001030663.1 0
129_2 253 60S ribosomal protein L23 A. thaliana 2.00E-74 97% NP_001189805.1 +
161_1 221 60S ribosomal protein L10B Hevea brasiliensis 3.00E-27 83% ADR71273.1 +
93_2 210 SHEPHERD A. thaliana 2.00E-26 86% BAB86368.1 +
98_1 272 Chaperonin 20 A. thaliana 2.00E-37 81% NP_197572.1 0
69_3 174 AT5G47880 A. thaliana 3.00E-20 92% BAH19602.1 0
23_4 208 MAP kinase A. thaliana 1.00E-20 98% CAB63149.1 0
139_4 300 Putative leucine-rich repeat receptor-like protein kinase A. thaliana 4.00E-25 55% NP_200956.1 0
72_1 238 CBL-interacting protein kinase 19 Populus trichocarpa 8.7 89% ABJ91226.1 0
39_3 200 At1g25390/F2J7_14 A. thaliana 3.00E-23 81% AAK97715.1 0
12_2 250 CDK activating kinase Nicotiana tabacum 3.7 46% BAF75824.1 +
22_2 252 Serine/threonine protein kinase ATR M. truncatula 6.00E-30 83% XP_003592675.1 +
235_3 285 Receptor-like protein kinase M. truncatula 9.00E-11 57% XP_003621121.1 +
110_1 408 Receptor-like protein kinase A. thaliana 2.00E-31 55% BAA96958.1 0
99_1 342 Protein phosphatase 2C (PP2C) Fagus sylvatica 6.00E-30 71% CAB90633.1 2.6 3.7
99_2 273 C3H4 type zinc finger protein A. thaliana 7.00E-28 64% NP_194986.2 +
54_1 318 AT5g57360/MSF19_2 A. thaliana 1.00E-45 75% AAK64006.1 +
57_1 246 E3 ligase SAP5 A. thaliana 2.00E-37 84% NP_566429.1 +
234_1 306 Root phototropism protein 2 A. thaliana 9.00E-29 60% NP_001031446.1 2.8 3.4
96_1 229 E3 ubiquitin-protein ligase BRE1-like protein M. truncatula 2.8 29% XP_003637493.1 0
187_1 314 Skp1-like protein 1 Prunus avium 4.00E-51 85% AFJ21662.1 0
120_2 227 Polyubiquitin Cicer arietinum 8.00E-39 100% BAA76429.1 0.1
158_2 313 Putative E3 ubiquitin-protein ligase XBAT31 isoform 2 Vitis vinifera 2.00E-18 63% XP_002283974.1 +
73_1 327 F-box family protein Citrus trifoliata 4.00E-64 98% ACL51019.1 0
112_1 202 F-box with WD-40 2 A. thaliana 1.00E-04 81% NP_567343.1 0
38_3 212 Drought-inducible cysteine proteinase RD19A precursor A. thaliana 1.00E-15 86% BAD94010.1 6.0 0.3
81_1 234 Metalloendopeptidase/zinc ion binding protein A. thaliana 1.00E-31 84% NP_568608.2 +
38_4 261 Serine carboxypeptidase II-3 M. truncatula 7.00E-21 74% XP_003589243.1 5.9
73_4 143 Proteasome component (PCI) domain protein A. thaliana 2.00E-07 69% NP_850994.1 +
240_1 359 RHOMBOID-like protein 3 A. thaliana 8.00E-38 65% NP_196342.1 +
39_1 248 Clp protease proteolytic subunit Citrus sinensis 2.00E-29 100% YP_740501.1 0
145_1 319 Subtilase family protein A. thaliana 3.00E-32 62% NP_199378.1 0
67_1 315 Aminopeptidase family protein A. thaliana 2.00E-45 85% NP_179997.1 0
75_1 251 Papain family cysteine protease A. thaliana 3.00E-26 85% NP_567489.1 0
138_4 320 AT4G01850 A. thaliana 3.00E-59 93% BAH20274.1 +
245_1 270 Methionine synthase Carica papaya 2.00E-45 98% ABS01352.1 0
231_4 216 N-carbamoylputrescine amidase A. thaliana 6.00E-10 76% NP_565650.1 0.1
61_2 289 2-oxoglutarate-dependent dioxygenase P. trichocarpa 1.00E-07 74% XP_002313083.1 +
251_3 276 Cystathionine beta-synthase domain-containing protein A. thaliana 8.00E-45 89% NP_195409.1 0
Stress responses
118_1 207 Inorganic pyrophosphatase 1 A. thaliana 2.00E-16 83% NP_565052.1 0 3.3
148_2 317 Nudix hydrolase 19 A. thaliana 2.00E-48 78% NP_197507.1 0 +
59_1 346 Fe (II)/ascorbate oxidase family protein SRG1 A. thaliana 2.00E-16 71% NP_173145.1 0
137_2 156 Thioredoxin superfamily protein A. thaliana 3.00E-10 58% NP_198706.1 +
68_3 146 Thioredoxin superfamily protein A. thaliana 3.00E-07 59% NP_201385.2 0.1
2_1 276 Group 5 late embryogenesis abundant protein (LEA5) Citrus unshiu 1.00E-35 94% ABD93882.1 3.0
125_1 389 Thaumatin-like protein 1 Apple tree 9.00E-48 69% JC7201 +
99_5 190 Protein sodium-and lithium-tolerant 1 A. thaliana 1.00E-23 92% NP_973625.1 0
104_3 171 Transducin/WD40 domain-containing protein (AtATG18a, AT3G62770) A. thaliana 3.00E-20 94% NP_001030918.4 0
109_1 257 Cold regulated 314 thylakoid membrane 2 A. thaliana 1.00E-19 56% NP_564327.1 0
150_2 238 Universal stress protein A-like protein M. truncatula 4.00E-27 71% XP_003591417.1 0.2
Signal transduction
182_2 117 Signal recognition particle 54 kDa protein 2 Solanum lycopersicum 7.00E-07 93% NP_001234428.1 0
108_2 257 14-3-3 protein Dimocarpus longan 6.00E-38 93% ACK76233.1 0
200_1 240 Heterotrimeric GTP-binding protein subunit beta 1 Nicotiana tabacum 3.00E-39 94% AAG12330.1 0
70_2 252 Pseudo-response regulator 5 Castanea sativa 5.00E-12 86% ABV53464.1 +
Cell transport
26_1 342 H+-ATPase 6, plasma membrane-type A. thaliana 1.00E-38 97% NP_178762.1 +
124_3 166 Calcium-transporting ATPase 1, endoplasmic reticulum-type (ECA1) A. thaliana 2.00E-14 83% NP_172259.1 3.1
66_1 177 Heavy metal ATPase P. trichocarpa 4.00E-15 78% XP_002303580.1 +
97_1 201 Proton pump-interactor 1 (PPI1, AT4G27500) A. thaliana 3.00E-12 56% BAH19433.1 +
53_1 340 ABC transporter G family member 40 A. thaliana 9.00E-35 67% NP_173005.1 +
210_1 247 Copper transporter P. trichocarpa 2.00E-15 64% XP_002298334.1 +
178_1 297 Cyclic nucleotide-gated ion channel 1 A. thaliana 0.002 50% NP_200125.1 +
49_3 252 Vacuolar-sorting receptor 3 A. thaliana 1.00E-40 77% NP_179081.1 +
137_1 249 Vacuolar protein-sorting-associated protein 37-1 A. thaliana 0.48 63% NP_190880.1 +
63_1 357 Vesicle-associated membrane protein-associated protein M. truncatula 3.00E-05 70% XP_003608721.1 +
51_1 316 SecY protein transport family protein A. thaliana 2.00E-51 87% NP_174225.2 +
250_2 263 Fat-free-like protein M. truncatula 1.00E-32 82% XP_003591407.1 +
79_2 237 Non-specific lipid-transfer protein M. truncatula 1.00E-04 53% XP_003610781.1 2.5
67_3 268 Sieve element occlusion protein 1 Nicotiana tabacum 6.00E-23 65% AFN06072.1 + +
89_2 230 AT5g24810/F6A4_20 A. thaliana 1.00E-04 75% AAK82520.1 0
6_1 368 Protein transport protein SEC61 gamma subunit Zea mays 2.00E-04 92% NP_001150911.1 0
249_2 370 Putative beta-subunit of adaptor protein complex 3, PAT2 A. thaliana 2.00E-15 42% NP_567022.1 0 0
61_1 228 Sugar transporter ERD6-like 5 A. thaliana 7.00E-15 57% NP_564665.3 0
179_2 225 Metal tolerance protein P. trichocarpa 6.00E-26 70% XP_002312066.1 0
51_4 221 Kinesin-related protein M. truncatula 0.38 35% XP_003612133.1 +
36_2 319 Bidirectional sugar transporter SWEET7 A. thaliana 5.00E-08 60% NP_567366.1 +
Cell wall and cytoskeleton modification
49_4 210 Caffeic acid 3-O-methyltransferase M. truncatula 9.00E-23 68% XP_003602597.1 0
125_2 145 Caffeic acid O-methyltransferase 3 Gossypium hirsutum 2.00E-05 55% ACZ06242.1 0.2
10_3 274 Chitinase Citrus sinensis 3.00E-54 94% CAA93847.1 0 0
249_4 217 Cellulose synthase Populus tremuloides 1.00E-20 83% AAO25581.1 0.2
33_3 249 O-methyltransferase 1 A. thaliana 1.00E-33 74% AAB96879.1 +
241_1 326 LIM domain-containing protein A. thaliana 1.00E-64 94% NP_195404.6 +
124_2 385 UDP-glucose flavonoid 7-O-glucosyltransferase M. truncatula 4.00E-12 73% XP_003629628.1 +
3_3 225 UDP-glucosyltransferase family 1 protein Citrus sinensis 6.00E-36 96% ACS87993.1 +
70_4 176 Limonoid UDP-glucosyltransferase Citrus sinensis 2.00E-26 98% ACD14147.1 +
63_2 228 Putative glucosyltransferase A. thaliana 2.00E-20 63% AAM61749.1 3.9
Other and unknown processes
229_4 181 Phytoene synthase Citrus unshiu 1.00E-26 95% AAF33237.1 0
231_1 316 Strictosidine synthase family protein A. thaliana 2.00E-28 68% NP_191262.2 0.4 2.6
72_3 194 Calcium-dependent lipid-binding domain-containing protein A. thaliana 8.00E-19 78% NP_564576.1 + +
135_2 335 Oxidoreductase family protein Arabidopsis lyrata subsp.lyrata 3.00E-40 65% XP_002874584.1 0
5_2 262 Alkaline-phosphatase-like protein A. thaliana 7.00E-44 89% NP_194697.1 0
10_5 147 Protein tolB M. truncatula 2.00E-06 55% XP_003630471.1 +
231_2 285 Cofactor of nitrate reductase and xanthine dehydrogenase 3 A. thaliana 5.00E-35 83% NP_171636.1 3.9
51_3 256 Neutral/alkaline non-lysosomal ceramidase A. thaliana 3.00E-14 71% NP_172218.1 0.5
229_2 207 PQ-loop repeat family protein A. lyrata subsp. lyrata 2.00E-22 74% XP_002870687.1 +
71_4 206 Metallo-beta-lactamase domain-containing protein A. thaliana 9.00E-19 66% NP_564334.1 +
117_3 214 Oligosaccharyltransferase complex/magnesium transporter family protein A. thaliana 5.00E-17 60% NP_176372.1 0
146_3 337 Mitochondrial protein, putative M. truncatula 1.00E-24 74% XP_003588355.1 0.4 0.3
20_1 287 AT1G16560 A. thaliana 2.00E-42 74% BAH19866.1 +
117_1 338 At2g27385 A. lyrata subsp. lyrata 8.00E-15 91% XP_002880912.1 0.2
173_1 290 SOUL heme-binding protein A. thaliana 1.00E-40 90% NP_197514.2 0
122_1 166 AT-LS1 product A. thaliana 2.00E-21 86% CAA41632.1 0
77_2 231 Alpha/beta-hydrolase family protein A. thaliana 3.00E-36 94% NP_196943.1 1.8
99_3 265 Conserved hypothetical protein Ricinus communis 0.069 44% XP_002511001.1 0 +
229_1 271 Conserved hypothetical protein R. communis 2.00E-09 90% XP_002532497.1 0
70_1 267 Predicted protein Micromonas pusilla CCMP1545 3.00E-49 94% XP_003064993.1 + +
123_1 364 PREDICTED: exportin-4-like Vitis vinifera 9.00E-47 81% XP_002266608.2 +
23_1 308 Predicted protein P. trichocarpa 0.062 34% XP_002317402.1 +
232_2 246 Predicted protein P. trichocarpa 5.00E-12 48% XP_002319603.1 0.1
237_1 265 PREDICTED: uncharacterized protein LOC100776190 Glycine max 5.8 36% XP_003524378.1 0
242_1 245 PREDICTED: uncharacterized protein LOC100789831 G. max 2.00E-07 60% XP_003520084.1 +
69_2 244 PREDICTED: uncharacterized protein LOC100853355 Vitis vinifera 0.008 49% XP_003634177.1 0
130_2 210 Uncharacterized protein A. thaliana 6.00E-21 79% NP_176682.1 1.7
252_1 301 Uncharacterized protein A. thaliana 8.00E-16 56% NP_001031080.1 0
97_2 163 Unnamed protein product Vitis vinifera 0.079 42% CBI21631.3 0 7.0
91_2 270 Hypothetical protein A. thaliana 0.19 54% AAD21766.1 3.9
9_1 255 Hypothetical protein MTR_5g051130 M. truncatula 1.00E-11 100% XP_003614394.1 +

Expression ratio: 0 means TDFs were only detected in control leaves; + means TDF were only detected in the B-toxic leaves. #: Number; BT: B-toxicity; CK: Control; CG: C. grandis; CS: C. sinensis. Functional classification was performed based on the information reported for each sequence by The Gene Ontology (http://amigo1.geneontology.org/cgi-bin/amigo/blast.cgi) and Uniprot (http://www.uniprot.org/). Relative expression ratio was obtained by gel image analysis, which was performed with PDQuest version 8.0.1 (Bio-Rad, Hercules, CA, USA).