Table 3.

PCR primers and fragment sequencing results

Marker	GenBank number	Position	SNP region^	Heinz*	YP*	PR	Gh13	LA1589*	LA2779	LA1969	LA1777	LA0386	BTI-87	S. gal *
REX	KF887310, KF887311	2,633,235	Chr6 NP	a	a	-	a	a	b	-	-	-	b	a
T0774	KF887301, KF887302	30,027,677	Chr6 NP	a	ac	-	a	ac	d	-	-	-	ad	ab
TG590	KF887295–KF887300	31,166,442	Peak Chr6	a	a	ab	be	ac	b	b	ad	d	bf	-
P6-051570	KF887303–KF887307	31,568,208	Peak Chr6	a	a	a	b	a	b	b	c	c	b	a
T0834	KF887312–KF887316	33,353,915	Peak Chr6	a	a	a	c	ab	cd	c	e	-	a	a
TG472	KF887308, KF887309	37,982,169	Chr6 NP	a	a	-	a	a	c	-	-	-	a	ab
P11-011790	KF887317, KF887318	4,777,374	Peak Chr11	a	a	-	b	b	c	-	-	-	b	a
P11-032130	KF887319, KF887320	21,629,704	Chr11 NP	a	a	-	a	ab	c	-	-	-	a	ab
P11-039390	KF887321, KF887322	23,182,355	Peak Chr11	a	a	-	c	c	d	-	-	-	a	ab
P11-039410	KF887323, KF887324	23,342,156	Peak Chr11	a	a	-	b	b	-	-	d	-	a	bc
P11-039420	KF887325	23,390,919	Peak Chr11	a	a	-	b	b	-	-	-	-	a	bc
P11-039500	KF887326	24,113,034	Peak Chr11	a	a	-	b	b	-	-	-	-	a	c
P11-044740	KF887327, KF887328	36,050,109	Chr11 NP	a	a	-	a	a	b	-	-	-	a	a
P11-045670	KF887329, KF887330	40,368,253	Chr11 NP	a	a	-	a	a	b	-	-	-	a	a
P11-050800	KF887331, KF887332	41,218,579	Chr11 NP	a	a	-	a	b	c	-	-	-	a	b
P11-051000	KF887333, KF887334	42,147,976	Chr11 NP	a	a	-	a	ab	c	-	-	-	a	ac
P11-056540	KF887335	43,330,076	Peak Chr11	a	a	-	b	b	-	-	-	-	a	bc
P11-062270	KF887336, KF887337	46,239,133	Peak Chr11	a	a	-	b	b	c	-	-	-	a	b
TG0302	KF887338–KF887341	51,878,967	Chr11 NP	a	a	-	a	b	c	-	d	d	a	b

^NP - Non SNP-peak.

*Heinz 1706, Yellow Pear, S. galapagense, and S. pimpinellifolium (LA1589) sequences were extracted from their genome assemblies.