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. 2014 Nov;160(Pt 11):2406–2420. doi: 10.1099/mic.0.081216-0

Table 2. Plasmids constructed during this work.

Plasmid Relevant features
pAKE600 derivatives
pKGB6.67 parA67 inserted as EcoRI/SalI fragment
pKLB60.4 PCR-amplified parA147 with the use of primers 1 and 6, inserted as EcoRI/HindIII fragment
pKLB60.5 parAΔ4859, PCR-amplified fragment (primers 8 and 2) encoding parA60262 cloned as HindIII/SalI fragment into pKLB60.4
pKLB60.6 PCR-amplified parA176 with the use of primers 1 and 7, inserted as EcoRI/HindIII fragment
pKLB60.7 parAΔ7785, PCR-amplified fragment (primers 9 and 2) encoding parA86262 cloned as HindIII/SalI fragment into pKLB60.6
pKLB60.8* parA84 inserted as EcoRI/SalI fragment
pUC18 derivatives
pGMB11* parA74 inserted as EcoRI/SalI fragment
pGMB12* parA75 inserted as EcoRI/SalI fragment
pGMB13* parA76 inserted as EcoRI/SalI fragment
pGMB14* parA78 inserted as EcoRI/SalI fragment
pGMB15* parA79 inserted as EcoRI/SalI fragment
pBGS18 derivatives
pGMB33* parA inserted as EcoRI/SalI fragment with internal SacI site without amino acid change
Bacterial two-hybrid vectors
pKGB4 pUT18 derivative with modified MCS to facilitate ORF cloning as EcoRI/KpnI or EcoRI/SacI fragments in-frame with the N terminus of CyaT18
pKGB4.14 pKGB4 with parA67cyaT18 translational fusion
pKGB4.15 pKGB4 with parA68cyaT18 translational fusion
pKGB4.16 pKGB4 with parA70cyaT18 translational fusion
pKGB4.17 pKGB4 with parA72cyaT18 translational fusion
pKGB4.18 pKGB4 with parA74cyaT18 translational fusion
pKGB4.19 pKGB4 with parA75cyaT18 translational fusion
pKGB4.20 pKGB4 with parA76cyaT18 translational fusion
pKGB4.21 pKGB4 with parA78cyaT18 translational fusion
pKGB4.22 pKGB4 with parA79cyaT18 translational fusion
pKGB4.24 pKGB4 with parA82cyaT18 translational fusion
pKGB4.25 pKGB4 with parA83cyaT18 translational fusion
pKGB4.26 pKGB4 with parA84a†–cyaT18 translational fusion
pKGB4.27 pKGB4 with parA84cyaT18 translational fusion
pKGB4.28 pKGB4 with parA85cyaT18 translational fusion
pKGB5 pKNT25 derivative with modified MCS to facilitate ORF cloning as EcoRI/KpnI or EcoRI/SacI fragments in-frame with the N terminus of CyaT25
pKGB5.14 pKGB5 with parA67cyaT25 translational fusion
pKGB5.15 pKGB5 with parA68cyaT25 translational fusion
pKGB5.16 pKGB5 with parA70cyaT25 translational fusion
pKGB5.17 pKGB5 with parA72cyaT25 translational fusion
pKGB5.18 pKGB5 with parA74cyaT25 translational fusion
pKGB5.19 pKGB5 with parA75cyaT25 translational fusion
pKGB5.20 pKGB5 with parA76cyaT25 translational fusion
pKGB5.21 pKGB5 with parA78cyaT25 translational fusion
pKGB5.22 pKGB5 with parA79cyaT25 translational fusion
pKGB5.24 pKGB5 with parA82cyaT25 translational fusion
pKGB5.25 pKGB5 with parA83cyaT25 translational fusion
pKGB5.26 pKGB5 with parA84acyaT25 translational fusion
pKGB5.27 pKGB5 with parA84cyaT25 translational fusion
pKGB5.28 pKGB5 with parA85cyaT25 translational fusion
pBBRMCS-1 derivative
pABB1.0 pBBRMCS-1 with modified EcoRI restriction site within the CmR cassette (PCR site-directed mutagenesis with primers 26 and 27)
pABB1.2 pAMB9.37 with tacpparB transcriptional fusion
pABB84 pAMB9.37 with tacpparA84a transcriptional fusion
pET28a (+) or pET28mod derivatives
pABB8.0 parA fragment PCR-amplified with primers 3 and 4 and inserted as NcoI/XhoI
pABB8.67 parA67 PCR-amplified and inserted as above
pABB8.78 parA78 PCR-amplified and inserted as above
pABB8.83 parA83 PCR-amplified and inserted as above
pABB8.84 parA84a PCR-amplified and inserted as above
pKLB8.3 parA40262 inserted as EcoRI/SalI fragment
pKLB8.4 parA140 inserted as EcoRI/SalI fragment
pKLB8.5 parA1151 inserted as EcoRI/SalI fragment
pKLB8.6 parA152262 inserted as EcoRI/SalI fragment
pKLB8.7 parA40151 inserted as EcoRI/SalI fragment
pKLB8.8 parA185 inserted as EcoRI/SalI fragment
pKLB8.9 parA86151 inserted as EcoRI/SalI fragment
pKLB8.10 parAΔ4859 inserted as EcoRI/SalI fragment
pKLB8.11 parAΔ7785 inserted as EcoRI/SalI fragment
Yeast two-hybrid vectors
pABB482* pGMB57 with parA82 inserted as EcoRI/SalI fragment
pABB483* pGMB57 with parA83 inserted as EcoRI/SalI fragment
pABB484* pGMB57 with parA84a inserted as EcoRI/SalI fragment
pABB485* pGMB57 with parA85 inserted as EcoRI/SalI fragment
pGMB21* pGAD424 with parA67 inserted as EcoRI/SalI fragment
pGMB22* pGAD424 with parA68 inserted as EcoRI/SalI fragment
pGMB24* pGAD424 with parA70 inserted as EcoRI/SalI fragment
pGMB25* pGAD424 with parA72 inserted as EcoRI/SalI fragment
pGMB57 pGAD424 with gal4ADparA40262 fragment with internal SacI site inserted as BamHI/SalI fragment
pKLB4.5 pGAD424 with gal4ADparA1151 inserted as EcoRI/SalI fragment
pKLB4.8 pKLB4.5 with gal4ADparA185 with SalI oligo with stop codon inserted in NaeI site
pKLB4.9 pKLB4.5 with gal4ADparA86–151 with EcoRI oligo with ATG codon inserted in NaeI site, EcoRI fragment deleted
pKLB6.3 pBTM116 with lexADBparA40262 inserted as BamHI/SalI fragment
pKLB6.4 pBTM116 with lexADBparA140 inserted as EcoRI/SalI fragment
pKLB6.5 pBTM116 with lexADBparA1151 inserted as EcoRI/SalI fragment
pKLB6.6 pBTM116 with lexADBparA152–262 inserted as EcoRI/SalI fragment
pKLB6.7 pBTM116 with lexADBparA40151 inserted as EcoRI/SalI fragment
pKLB6.8 pBTM116 with lexADBparA185 inserted as EcoRI/SalI fragment
pKLB6.9 pBTM116 with lexADBparA86–151 inserted as EcoRI/SalI fragment
pKLB6.10 pBTM116 with lexADBparAΔ4859 inserted as EcoRI/SalI fragment
pKLB6.11 pBTM116 with lexADBparAΔ7785 inserted as EcoRI/SalI fragment
*

Construction of these plasmids is described in detail in Supplementary Materials and Methods.

parA84a encodes ParAL84A, whereas parA84 encodes ParAL84K.