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. Author manuscript; available in PMC: 2015 Oct 2.
Published in final edited form as: J Am Stat Assoc. 2014 Oct 2;109(507):905–930. doi: 10.1080/01621459.2014.901223

Table 7.

Significant SNPs in the genome-wide association study of a single substance dependence from association tests. op: opiates; oth: other drugs.

Chr SNP MAF Gene p-values
T T W,1 T W,2 T^IPW
op
Black Men
2 rs2377339 0.019 NCK2 1.1e-8 1.1e-9 1.4e-9 8.2e-9
16 rs2042360 0.066 9.2e-7 6.5e-8 4.3e-7 9.6e-7
17 rs17544779 0.017 5.6e-8 6.3e-6 1.8e-6 4.6e-8
White Men
13 rs9529180 0.111 PCDH9 1.5e-7 4.6e-7 4.9e-8 1.1e-7
13 rs9540995 0.112 PCDH9 2.2e-7 7.0e-7 5.9e-8 1.5e-7
13 rs9529185 0.111 PCDH9 1.6e-7 4.7e-7 5.2e-8 1.1e-7
Black Women
5 rs2441010 0.012 1.0e-7 1.1e-4 8.2e-5 7.6e-8
7 rs2528381 0.084 UBE2D4 1.9e-5 5.1e-8 2.9e-5 1.6e-5
7 rs1182398 0.014 UBE3C 1.9e-7 5.6e-8 1.2e-6 1.1e-7
10 rs7911634 0.011 PCDH15 7.2e-5 2.7e-9 3.1e-6 6.6e-5
14 rs17197261 0.020 0R10G3 1.3e-5 4.5e-8 1.4e-3 1.0e-5
White Women
19 rs3745816 0.016 EML2 2.2e-5 4.4e-11 2.0e-5 1.3e-5
19 rs4445998 0.015 EML2 1.2e-5 1.2e-11 2.4e-5 6.7e-6
19 rs1545040 0.020 EML2 1.5e-3 5.7e-8 2.5e-3 1.1e-3

oth
Black Women
11 rs11603357 0.041 2.5e-7 2.6e-8 1.1e-8 1.5e-7
White Women
17 rs3098945 0.187 ANKRD13B 4.5e-6 1.8e-8 6.0e-7 1.1e-6