Table 7. Comparison of QTL-peak loci genotype frequency between the large and small subpopulations.
| QTL-peak locus | Genotype frequency | P-value | |
| Large subpopulation | Small subpopulation | ||
| 423886 | np (0.58) nn (0.25) | np (0.26) nn (0.60) | 0.000 |
| 288691 | np (0.27) nn (0.58) | np (0.58) nn (0.28) | 0.001 |
| 337145 | np (0.23) nn (0.60) | np (0.46) nn (0.42) | 0.021 |
| 99925 | np (0.54) nn (0.33) | np (0.28) nn (0.58) | 0.007 |
| 410206 | np (0.21) nn (0.56) | np (0.50) nn (0.42) | 0.012 |
| 546110 | np (0.31) nn (0.56) | np (0.54) nn (0.34) | 0.017 |
| 425446 | lm (0.31) ll (0.56) | lm (0.52) ll (0.32) | 0.016 |
| 291872 | lm (0.52) ll (0.35) | lm (0.26) ll (0.58) | 0.009 |
| 373604 | lm (0.52) ll (0.29) | lm (0.36) ll (0.58) | 0.017 |
| 466758 | hk (0.58) hh (0.12) kk (0.21) | hk (0.32) hh (0.38) kk (0.16) | 0.006 |
| 428260 | np (0.23) nn (0.65) | np (0.52) nn (0.34) | 0.001 |
| 298299 | lm (0.58) ll (0.31) | lm (0.32) ll (0.48) | 0.022 |
| 154165 | np (0.56) nn (0.27) | np (0.32) nn (0.54) | 0.006 |
| 306323 | lm (0.54) ll (0.35) | lm (0.28) ll (0.58) | 0.009 |
| 471635 | lm (0.31) ll (0.54) | lm (0.58) ll (0.30) | 0.007 |
| 196733 | np (0.31) nn (0.56) | np (0.44) nn (0.40) | 0.124 |
| 411871 | np (0.54) nn (0.29) | np (0.42) nn (0.44) | 0.138 |
| 471489 | hk (0.31) hh (0.33) kk (0.17) | hk (0.36) hh (0.14) kk (0.40) | 0.014 |
The genotype frequency difference is statistically significant at the 5% level. “ll”, homozygous genotype as in paternal; “lm”, heterozygous genotype as in maternal; “nn”, homozygous genotype as in maternal; “np”, heterozygous genotype as in paternal; “hh”, “kk”, homozygous genotype in F1 progeny, and “hk” types represent heterozygous genotype as in paternal or maternal.