Table 1. Results of allelic association analysis.
Gene | SNP | SLE MAF*% | Controls MAF% | P | OR |
STAT4 | rs7574865 | 0.35 | 0.2 | 3×10−7 | 2.13 (1.59–2.85) |
IL10 | rs1800872 | 0.26 | 0.31 | 0.09 | 0.79 (0.6–1.04) |
rs3024505 | 0.17 | 0.12 | 0.02 | 1.52 (1.07–2.16) | |
HCP5 | rs9469003 | 0.18 | 0.19 | 0.67 | 0.93 (0.65–1.32) |
rs3099844 | 0.1 | 0.05 | 0.01 | 2.06 (1.18–3.6) | |
IL23R | rs11209026 | 0.053 | 0.078 | 0.1 | 0.66 (0.4–1.09) |
rs11803505 | 0.34 | 0.34 | 1 | 1 (0.77–1.31) | |
rs7517847 | 0.4 | 0.39 | 0.65 | 1.06 (0.82–1.87) | |
PSORS1C1 | rs2233945 | 0.2 | 0.17 | 0.26 | 1.19 (0.87–1.63) |
IRGM | rs13361189 | 0.09 | 0.11 | 0.38 | 0.79 (0.46–1.34) |
rs4958847 | 0.13 | 0.16 | 0.43 | 0.84 (0.54–1.3) | |
ATG16L1 | rs2241880 | 0.46§ | 0.43§ | 0.39 | 0.87 (0.64–1.19) |
PTPN2 | rs2542151 | 0.14 | 0.11 | 0.38 | 1.29 (0.73–2.3) |
rs7234029 | 0.13 | 0.15 | 0.48 | 0.81 (0.45–1.46) | |
ERAP1 | rs30187 | 0.36 | 0.38 | 0.65 | 0.93 (0.67–1.28) |
rs27524 | 0.38 | 0.38 | 0.89 | 1.02 (0.79–1.32) | |
MIR146A | rs2910164 | 0.3 | 0.27 | 0.49 | 1.1 (0.84–1.45) |
rs2431697 | 0.41 | 0.42 | 0.63 | 0.93 (0.68–1.26) | |
IRAK1 | rs3027898 | 0.29 | 0.26 | 0.3 | 1.17 (0.87–1.6) |
* MAF: Minor allele frequency,
Allele A.