Table 5. Association between disease phenotypes and studied polymorphisms.

Phenotype	Gene	Locus	P	OR (95% CI)
Pericarditis	ATG16L1	rs2241880	0.024	0.43 (0.2–0.9)
	STAT4	rs7574865	0.015	2.32 (1.17–4.6)
	PTPN2	rs2542151	0.032	2.35 (1.07–5.18)
Serositis	PTPN2	rs2542151	0.022	2.49 (1.13–5.5)
Aphthous/ulcers	IL23R	rs7517847	0.046	2.13 (1.0–4.52)
	IL23R	rs11209026	0.045	2.6 (0.99–6.86)
Arthritis	MIR146A	rs2910164	0.024	1.93 (1.09–3.4)
Malar Rash	IL23R	rs11209026	0.048	0.44 (0.19–1.01)
aCL	IL10	rs3024505	0.027	0.49 (0.26–0.93)
	HCP5	rs3099844	0.005	0.34 (0.15–0.74)
	Mir146a	rs2431697	0.035	2.03 (1.05–3.95)
ENA	STAT4	rs7574865	0.018	1.93 (1.12–3.36)
C3 (below normal values)	MIR146A	rs2910164	0.029	1.91 (1.06–3.4)
Anti-Ro/SSA	PSORS1C1	rs2233945	0.024	0.48 (0.25–0.91)
	HCP5	rs9469003	0.007	0.37 (0.18–0.78)
	HCP5	rs3099844	0.016	2.28 (1.15–4.52)
LAC	PSORS1C1	rs2233945	0.008	2.44 (1.25–4.76)
C4 (below normal values)	PSORS1C1	rs2233945	0.009	2.24 (1.22–4.12)
Anti-dsDNA	HCP5	rs3099844	0.047	0.5 (0.25–1)