Table 2. GO analysis results of DE genes at the SS and MS stages between JA-CMS and JB.
| GOaccessionID | Description | Domain | SS stage | MS stage | ||||||
| Pvalue | Qvalue | DEgene # | Pvalue | Qvalue | DEgene # | |||||
| GO:0055114 | Oxidation-reduction process | BP | 1.53E-07 | 7.90E-04 | 100 | 6.79E-08 | 2.43E-04 | 92 | ||
| GO:0016705 | Oxidoreductase activity, acting on paired donors, withincorporation or reduction of molecular oxygen | MF | 6.46E-07 | 1.66E-03 | 35 | 1.02E-07 | 2.43E-04 | 34 | ||
| GO:0001071 | Nucleic acid binding transcription factor activity | MF | 1.58E-06 | 2.04E-03 | 48 | Notsignificant | ||||
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | MF | 1.58E-06 | 2.04E-03 | 48 | Notsignificant | ||||
| GO:0016491 | Oxidoreductase activity | MF | 2.73E-06 | 2.44E-03 | 96 | 4.37E-07 | 4.51E-04 | 89 | ||
| GO:0005667 | Transcription factor complex | CC | 2.83E-06 | 2.44E-03 | 55 | Notsignificant | ||||
| GO:0009521 | Photosystem | CC | 4.40E-06 | 3.24E-03 | 17 | 6.62E-05 | 3.10E-02 | 14 | ||
| GO:0034357 | Photosynthetic membrane | CC | 5.60E-06 | 3.61E-03 | 18 | 6.58E-05 | 3.10E-02 | 15 | ||
| GO:0046872 | Metal ion binding | MF | 8.76E-06 | 4.86E-03 | 116 | 1.89E-07 | 2.43E-04 | 110 | ||
| GO:0043169 | Cation binding | MF | 9.43E-06 | 4.86E-03 | 118 | 1.83E-07 | 2.43E-04 | 112 | ||
| GO:0005654 | Nucleoplasm | CC | 1.20E-05 | 5.13E-03 | 58 | Notsignificant | ||||
| GO:0044451 | Nucleoplasm part | CC | 1.20E-05 | 5.13E-03 | 58 | Notsignificant | ||||
| GO:0015979 | Photosynthesis | BP | 1.40E-05 | 5.54E-03 | 26 | 1.07E-04 | 4.59E-02 | 22 | ||
| GO:0008152 | Metabolic process | BP | 1.57E-05 | 5.77E-03 | 394 | Notsignificant | ||||
| GO:0044436 | Thylakoid part | CC | 2.34E-05 | 8.05E-03 | 18 | Notsignificant | ||||
| GO:0009579 | Thylakoid | CC | 2.81E-05 | 8.58E-03 | 18 | Notsignificant | ||||
| GO:0016706 | Oxidoreductase activity, acting on paired donors, with incorporationor reduction of molecular oxygen, 2-oxoglutarate as one donor,and incorporation of one atom each of oxygen into both donors | MF | 2.83E-05 | 8.58E-03 | 14 | 7.40E-06 | 5.45E-03 | 14 | ||
| GO:0031981 | Nuclear lumen | CC | 7.38E-05 | 2.11E-02 | 63 | Notsignificant | ||||
| GO:0032787 | Monocarboxylic acid metabolic process | BP | 8.31E-05 | 2.25E-02 | 24 | Notsignificant | ||||
| GO:0009538 | Photosystem I reaction center | CC | 9.21E-05 | 2.37E-02 | 5 | 5.10E-05 | 2.92E-02 | 5 | ||
| GO:0044428 | Nuclear part | CC | 1.07E-04 | 2.62E-02 | 75 | Notsignificant | ||||
| GO:0043233 | Organelle lumen | CC | 1.21E-04 | 2.71E-02 | 63 | Notsignificant | ||||
| GO:0070013 | Intracellular organelle lumen | CC | 1.21E-04 | 2.71E-02 | 63 | Notsignificant | ||||
| GO:0044710 | Single-organism metabolic process | BP | 1.47E-04 | 3.15E-02 | 184 | Notsignificant | ||||
| GO:0031974 | Membrane-enclosed lumen | CC | 1.55E-04 | 3.19E-02 | 63 | Notsignificant | ||||
| GO:0051213 | Dioxygenase activity | MF | 1.90E-04 | 3.77E-02 | 15 | 3.09E-06 | 2.65E-03 | 17 | ||
| GO:0048037 | Cofactor binding | MF | 2.17E-04 | 4.13E-02 | 38 | Notsignificant | ||||
| GO:0046914 | Transition metal ion binding | MF | Notsignificant | 2.03E-05 | 1.31E-02 | 83 | ||||
Notes: 1) BP = Biological process, CC = Cellular component, MF = Molecular function; Q value = FDR corrected p value. 2) Only GO categories with FDR q value ≤ 0.05 are presented here. 3) GO categories are arranged based on q values from smallest to largest at the SS stage.