Table 4. Down-regulated oxidoreductase and alpha-linolenic acid metabolism genes in JA-CMS at the SS and/or MS stages.
| Category | Function | Gene ID | SS stage | MS stage | ||||
| Fold | P value | Q value | Fold | P value | Q value | |||
| Oxidoreductase | Iron/ascorbate family oxidoreductase | comp74308_c0 | −2.17 | 1.52E-19 | 4.38E-17 | −2.46 | 1.15E-30 | 6.70E-28 |
| comp75973_c0 | −1.29 | 1.58E-14 | 3.19E-12 | −1.60 | 6.00E-28 | 2.92E-25 | ||
| comp76619_c0 | −1.97 | 2.58E-69 | 4.05E-66 | −1.58 | 3.31E-40 | 2.66E-37 | ||
| comp76821_c0 | −1.55 | 6.12E-11 | 8.77E-09 | −1.12 | 1.53E-06 | 1.34E-04 | ||
| comp77552_c0 | −3.93 | 8.85E-91 | 2.22E-87 | −2.97 | 1.16E-42 | 1.06E-39 | ||
| comp78972_c0 | −4.08 | 8.28E-77 | 1.67E-73 | −2.89 | 8.24E-43 | 7.64E-40 | ||
| comp79641_c0 | −1.96 | 5.14E-05 | 3.22E-03 | −2.35 | 6.26E-07 | 5.81E-05 | ||
| comp79893_c0 | −1.16 | 1.52E-13 | 2.81E-11 | −1.02 | 9.31E-12 | 1.54E-09 | ||
| Monodehydroascorbate reductase (MDHAR) | comp73498_c0 | −4.21 | 1.43E-07 | 1.37E-05 | Not significant | |||
| Glutathione peroxidase (GPX) | comp73626_c0 | −1.45 | 2.69E-80 | 6.02E-77 | −1.55 | 5.17E-97 | 1.58E-93 | |
| Glutathione S-transferase (GST) | comp40493_c0 | −2.71 | 1.54E-11 | 2.36E-09 | −2.46 | 3.63E-13 | 6.88E-11 | |
| comp74280_c0 | −1.66 | 3.00E-14 | 5.83E-12 | −1.32 | 1.37E-10 | 2.00E-08 | ||
| comp76601_c0 | −1.85 | 3.65E-15 | 7.60E-13 | −1.77 | 2.14E-16 | 5.29E-14 | ||
| comp81581_c0 | −1.54 | 1.40E-05 | 1.01E-03 | −1.36 | 4.44E-05 | 2.95E-03 | ||
| comp92611_c0 | −2.96 | 1.61E-06 | 1.35E-04 | −2.32 | 3.14E-06 | 2.60E-04 | ||
| Thioredoxin 1 | comp63917_c0 | Not significant | −1.57 | 4.86E-07 | 4.58E-05 | |||
| Thioredoxin reductase (NADPH) | comp87684_c1 | −1.17 | 1.99E-12 | 3.35E-10 | −1.20 | 1.21E-13 | 2.37E-11 | |
| Alpha-linolenic acid metabolism | Allene oxide synthase (AOS) | comp75493_c0 | −1.45 | 1.04E-127 | 5.93E-124 | −1.02 | 1.57E-58 | 2.34E-55 |
| Allene oxide cyclase (AOC) | comp70218_c0 | −2.68 | 1.51E-10 | 2.09E-08 | −2.03 | 1.63E-08 | 1.83E-06 | |
| comp80154_c0 | −1.75 | 4.08E-59 | 5.11E-56 | −1.61 | 7.73E-53 | 9.09E-50 | ||
| OPDA (12-oxophytodienoic acid) reductase | comp79354_c1 | −2.83 | 8.17E-85 | 1.97E-81 | −2.84 | 1.73E-71 | 3.53E-68 | |
| OPC-8:0 CoA ligase 1 | comp82201_c0 | −1.01 | 8.43E-29 | 3.95E-26 | Not significant | |||
| Acyl-CoA oxidase (AOX) | comp86147_c0 | −1.80 | 4.97E-105 | 1.64E-101 | −1.63 | 4.80E-79 | 1.18E-75 | |
| Acetyl-CoA acyltransferase 1 (ACAA) | comp80628_c2 | -1.09 | 7.33E-17 | 1.73E-14 | Not significant | |||
| Alpha-dioxygenase | comp66758_c0 | −5.66 | 2.09E-11 | 3.15E-09 | ||||
Note: Fold = log2(fold change). Significant DE genes were determined based on |log2(fold change)|>1 and FDR q value<0.005.