Table 3.
Analyses of interactions of differentially expressed miRNAs and mRNAs, considering T1D* and T2D* patients
| mRNA | microRNA | # DIANAmT | # miRanda | # miRDB | # miRWalk | # RNAhybrid | # Targetscan |
|---|---|---|---|---|---|---|---|
|
BATF2(⬇) |
miR-342-3p(⬇) |
1 |
1 |
0 |
1 |
1 |
1 |
|
C1orf87(⬆) |
miR-342-3p(⬇) |
0 |
1 |
0 |
1 |
0 |
1 |
|
PANX2(⬆) |
miR-342-3p(⬇) |
1 |
1 |
0 |
1 |
1 |
1 |
|
PDE4D(⬆) |
miR-342-3p(⬇) |
0 |
0 |
0 |
1 |
0 |
1 |
|
PITPNM2(⬆) |
miR-342-3p(⬇) |
1 |
1 |
0 |
1 |
1 |
1 |
|
RASGEF1B(⬆) |
miR-342-3p(⬇) |
1 |
1 |
0 |
1 |
1 |
1 |
|
SPG20(⬇) |
miR-342-3p(⬇) |
1 |
1 |
0 |
1 |
1 |
1 |
|
ZSWIM3(⬇) |
miR-342-3p(⬇) |
1 |
1 |
0 |
1 |
1 |
1 |
|
ANKRD22(⬇) |
miR-720(⬇) |
0 |
1 |
0 |
1 |
1 |
1 |
|
FBLN2(⬆) |
miR-27a(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
GPR125(⬆) |
miR-27a(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
IFNG(⬇) |
miR-27a(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
PITPNM2(⬆) |
miR-27a(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
SNF1LK(⬆) |
miR-27a(⬆) |
1 |
1 |
1 |
1 |
1 |
1 |
|
ABCD3(⬆) |
miR-21(⬆) |
1 |
1 |
1 |
1 |
1 |
1 |
|
CA1(⬇) |
miR-21(⬆) |
0/1 |
0/1 |
0 |
1 |
0 |
1 |
|
CCL20(⬆) |
miR-21(⬆) |
1 |
1 |
1 |
1 |
1 |
1 |
|
ABCD3(⬆) |
miR-130a(⬆) |
1 |
1 |
0 |
1 |
1 |
0 |
|
ABCD3(⬆) |
miR-144(⬇) |
0 |
1 |
0 |
0 |
0 |
0 |
|
MPHOSPH6(⬆) |
miR-144(⬇) |
1 |
1 |
1 |
1 |
1 |
1 |
|
KRT2(⬆) |
miR-140-3p(⬇) |
1 |
1 |
0 |
1 |
1 |
1 |
|
RASGEF1B(⬆) |
miR-140-3p(⬇) |
1 |
1 |
0 |
1 |
1 |
1 |
|
STK35(⬆) |
miR-140-3p(⬇) |
1 |
1 |
0 |
1 |
1 |
1 |
|
IL1A(⬆) |
miR-150(⬆) |
1 |
1 |
1 |
1 |
1 |
1 |
|
ADAMTSL4(⬇) |
miR-223(⬆) |
1 |
0 |
0 |
1 |
1 |
1 |
|
CXCL3(⬆) |
miR-223(⬆) |
0 |
0 |
0 |
1 |
0 |
0 |
|
SLC11A2(⬆) |
miR-223(⬆) |
1 |
1 |
1 |
1 |
1 |
1 |
|
ADAMTSL4(⬇) |
miR-451(⬆) |
1 |
1 |
0 |
1 |
1 |
0 |
|
CRABP1(⬆) |
miR-451(⬆) |
1 |
1 |
0 |
1 |
1 |
0 |
|
DDX3Y(⬆) |
miR-451(⬆) |
1 |
1 |
0 |
1 |
0 |
1 |
|
SETD5(⬇) |
miR-451(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
SLC16A3(⬆) |
miR-451(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
ANKRD22(⬇) |
miR-30e(⬇) |
1 |
1 |
1 |
1 |
1 |
1 |
|
GPR125(⬆) |
miR-30e(⬇) |
1 |
1 |
1 |
1 |
1 |
1 |
|
IL1A(⬆) |
miR-30e(⬇) |
1 |
1 |
1 |
1 |
1 |
1 |
|
IRS2(⬆) |
miR-30e(⬇) |
1 |
1 |
0 |
1 |
1 |
1 |
|
PITPNM2(⬆) |
miR-30e(⬇) |
1 |
1 |
1 |
1 |
1 |
1 |
|
SETD5(⬇) |
miR-30e(⬇) |
0 |
1 |
1 |
1 |
1 |
1 |
|
SNAI1(⬆) |
miR-30e(⬇) |
1 |
1 |
1 |
1 |
1 |
1 |
|
ZNF507(⬆) |
miR-30e(⬇) |
1 |
1 |
0 |
1 |
1 |
1 |
|
ID1(⬆) |
miR-1260(⬇) |
0 |
1 |
0 |
1 |
1 |
1 |
|
STK35(⬆) |
miR-1308(⬇) |
0 |
1 |
0 |
1 |
1 |
1 |
|
SOD2(⬆) |
miR-142-5p(⬇) |
1 |
1 |
0 |
1 |
1 |
0 |
|
TRIM36(⬇) |
miR-142-5p(⬇) |
1 |
0 |
0 |
0 |
0 |
1 |
|
C1orf25(⬇) |
let-7a(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
C9orf40(⬇) |
let-7a(⬆) |
0 |
1 |
0 |
1 |
1 |
1 |
|
MPHOSPH6(⬆) |
let-7a(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
PARS2(⬇) |
let-7a(⬆) |
1 |
1 |
1 |
1 |
1 |
1 |
|
TBKBP1(⬆) |
let-7a(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
TSPYL5(⬆) |
let-7a(⬆) |
0 |
1 |
0 |
1 |
1 |
1 |
|
C9orf40(⬇) |
let-7e(⬆) |
0 |
1 |
0 |
1 |
1 |
1 |
|
IRS2(⬆) |
let-7e(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
MPHOSPH6(⬆) |
let-7e(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
PARS2(⬇) |
let-7e(⬆) |
1 |
1 |
1 |
1 |
1 |
1 |
|
TBKBP1(⬆) |
let-7e(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
TSPYL5(⬆) |
let-7e(⬆) |
0 |
1 |
0 |
1 |
1 |
1 |
|
C1orf25(⬇) |
let-7f(⬆) |
0 |
1 |
0 |
1 |
0 |
1 |
|
C9orf40(⬇) |
let-7f(⬆) |
0 |
1 |
0 |
1 |
1 |
1 |
|
MPHOSPH6(⬆) |
let-7f(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
PARS2(⬇) |
let-7f(⬆) |
1 |
1 |
0 |
1 |
0 |
1 |
|
TBKBP1(⬆) |
let-7f(⬆) |
1 |
1 |
0 |
1 |
0 |
1 |
|
TSPYL5(⬆) |
let-7f(⬆) |
0 |
1 |
0 |
1 |
1 |
1 |
|
C1orf25(⬇) |
let-7 g(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
MPHOSPH6(⬆) |
let-7 g(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
PARS2(⬇) |
let-7 g(⬆) |
1 |
1 |
1 |
1 |
1 |
1 |
|
TBKBP1(⬆) |
let-7 g(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
TSPYL5(⬆) |
let-7 g(⬆) |
0 |
1 |
0 |
1 |
1 |
1 |
|
C1orf96(⬆) |
miR-29b(⬇) |
1 |
1 |
1 |
1 |
1 |
1 |
|
DFNB31(⬆) |
miR-29b(⬇) |
1 |
1 |
0 |
1 |
1 |
1 |
|
ID1(⬆) |
miR-29b(⬇) |
1 |
1 |
0 |
1 |
1 |
1 |
|
IFNG(⬇) |
miR-29b(⬇) |
1 |
1 |
0 |
1 |
1 |
1 |
|
PER1(⬆) |
miR-29b(⬇) |
1 |
1 |
0 |
1 |
1 |
1 |
|
PITPNM2(⬆) |
miR-29b(⬇) |
1 |
1 |
0 |
1 |
1 |
1 |
|
KRT2(⬆) |
miR-20b(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
TRIM36(⬇) |
miR-20b(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
|
MPHOSPH6(⬆) |
miR-199a-3p(⬆) |
1 |
1 |
1 |
1 |
1 |
1 |
|
TRIM36(⬇) |
miR-199a-3p(⬆) |
1 |
1 |
1 |
1 |
1 |
1 |
|
EREG(⬆) |
miR-142-3p(⬇) |
1 |
1 |
0 |
1 |
1 |
1 |
|
RASGEF1B(⬆) |
miR-103(⬆) |
1 |
1 |
0 |
1 |
1 |
1 |
| TBKBP1(⬆) | miR-103(⬆) | 1 | 1 | 0 | 1 | 0 | 1 |
*T1D – type 1 diabetes and T2D – type 2 diabetes.
#Algorithms for mRNA/miRNA interactions.
Number 1 represents predicted interaction and number 0 indicates non-predicted interaction.
⬆ mRNA or miRNA upregulation and ⬇mRNA or miRNA downregulation.