. 2014 Nov 6;5:607. doi: 10.3389/fpls.2014.00607

Table 1.

Validation of microarray data.

Gene		FC Cig_4B^a		FC Cig_B510		FC Nip_4B		FC Nip_B510^b
		Log₂ (qPCR)	Log₂ (array)	Log₂ (qPCR)	Log₂ (array)	Log₂ (qPCR)	Log₂ (array)	Log₂ (qPCR)	Log₂ (array)
Differentially expressed in all conditions
Os09g0358000	Tyrosine kinase domain	2.27	1.77	2.53	2.46	1.87	3.01	2.06	1.32
Differentially expressed in Cig_4B and Nip_4B only
Os09g0417800	WRKY transcription factor 62	1.49	1.75	0.66	_	1.00	1.88	−0.01	_
Os11g0686900	Similar to NB-ARC domain	0.83	1.16	−0.23	_	1.74	2.40	nd	_
Differentially expressed in Cig_B510 and Nip_B510 only
Os06g0115600	Common symbiosis signaling (SYM) pathway	−0.09	_	−2.00	−1.84	0.01	_	−1.18	−1.47
Os05g0583000	Similar to WRKY8	0.32	_	2.92	1.71	0.16	_	2.24	1.39
Os12g0139400	A-type response regulator, cytokinin signaling	−0.15	_	−2.84	−1.78	−0.09	_	−2.94	−1.10
Os11g0143300	A-type response regulator, cytokinin signaling	0.15	_	−1.09	−1.95	0.04	_	−2.25	−1.62
Os02g0805100	Similar to auxin-responsive protein IAA12	−0.01	_	−1.15	−1.34	−0.23	_	−2.47	−1.16
Differentially expressed in Cig_4B and Cig_B510 only
Os05g0196600	Similar to ACC synthase	0.38	1.33	0.95	1.63	−0.15	_	0.16	_
Differentially expressed in Cig_4B only
Os08g0136100	Homeobox-leucine zipper domain	0.87	1.11	0.25	_	0.28	_	−0.14	_
Significantly regulated in Cig_B510 only
Os06g0179200	Similar to Nodulin-like protein	0.16	_	−1.60	−1.78	0.18	_	0.12	_
Os08g0499300	WRKY transcription factor 30	0.10	_	0.52	1.34	0.12	_	−0.06	_
Significantly regulated in Nip_B510 only
Os01g0904700	B-type response regulator, cytokinin signaling	−0.12	_	−0.07	_	−0.04	_	−1.09	−1.21
Os05g0515400	Similar to auxin response factor 14	−0.09	_	0.10	_	−0.09	_	−1.15	−1.42
Reference gene
Os03g0718100	Actin

Dashes replace non-significant fold change values obtained from microarray data (|Log₂(FC)| ≤ 1 and P_adj > 0.05).

nd, not determined.