Table 1.
Summary of sequences analysis
| Sample | Raw reads | Clean reads | Clean bases | Error (%) | Q20 (%) | Q30 (%) | GC (%) |
|---|---|---|---|---|---|---|---|
| Root1_1 |
22398042 |
20461257 |
3.07G |
0.05 |
98.03 |
93.18 |
44.28 |
| Root1_2 |
22398042 |
20461257 |
3.07G |
0.05 |
97.66 |
92.42 |
44.31 |
| Shoot1_1 |
20428709 |
17569959 |
2.64G |
0.05 |
98.40 |
94.19 |
45.32 |
| Shoot1_2 |
20428709 |
17569959 |
2.64G |
0.07 |
95.79 |
86.91 |
45.37 |
| Root2_1 |
24059986 |
21610426 |
3.24G |
0.05 |
97.88 |
92.69 |
44.37 |
| Root2_2 |
24059986 |
21610426 |
3.24G |
0.06 |
96.99 |
90.46 |
44.42 |
| Shoot2_1 |
20592635 |
17355269 |
2.6G |
0.05 |
98.31 |
93.91 |
45.52 |
| Shoot2_2 |
20592635 |
17355269 |
2.6G |
0.09 |
94.30 |
83.15 |
45.58 |
| Summary | 174958744 | 153993822 | 23.1G |
Root1: Controlled root.
Root2: Treated root.
Root1_1: Reads sequencing of controlled root from the left.
Root1_2: Reads sequencing of controlled root from the right.
Q20: The percentage of bases with a Phred value >20.
Q30: The percentage of bases with a Phred value >30.