Table 2.
Summary of applying MC 3 to several published models
| Model | (a) Metabolites | (b) Reactions | (c) Exchange reactions | (d) Reversible reactions | (e) SCM | (f) DEM | (g) ZFR | (h) UR | (i) CR | (j) RCR |
|---|---|---|---|---|---|---|---|---|---|---|
| Minimal E. Coli |
53 |
70 |
15 |
19 |
2 |
2 |
3 |
8 |
14 |
0 |
|
E. Coli iJR904 |
761 |
1075 |
143 |
388 |
56 |
67 |
150 |
196 |
325 |
8 |
|
E. Coli iAF1260 |
1668 |
2382 |
299 |
852 |
87 |
118 |
184 |
461 |
970 |
32 |
| adipocyte |
26 |
34 |
7 |
0 |
0 |
0 |
0 |
0 |
10 |
0 |
| CHO cell |
231 |
275 |
34 |
108 |
0 |
0 |
0 |
53 |
540 |
0 |
| Leishmania major | 1101 | 1112 | 64 | 630 | 250 | 259 | 376 | 374 | 156 | 9 |
For each model, the number of metabolites, reactions, exchange reactions and reversible reactions are indicated in columns a-d. The results of applying MC3 are indicated in columns: (e) Singly Connected Metabolites (SCM), (f) Dead-End Metabolites (DEM), (g) Zero-Flux Reactions (ZFR), (h) Unsatisfied Reversibility (UR), (i) Coupled Reactions (CR), and (j) Reversibly Coupled Reactions (RCR).