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. 2013 Nov 23;10:344. doi: 10.1186/1743-422X-10-344

Table 2.

Alignment of amino acid sequences in the highly polymorphic region (HPR) of the HE gene from selected low pathogenic infectious salmon anaemia virus (ISAV-HPR0) isolates worldwide

Group ISAV (GenBank Acc. No) Predicted amino acid sequence 1 aa deleted
HPRO
Canada 980712 (AY46060)
TDV-JIRDAIPPQTFNTFNQPSTSVLSNIFISM-GVA
0
HPRO
U. K. NWM10 (FJ178189)
TDV-KIRDAIPPQLNQTFNTNQPSTSVLSNIFISM-GVA
0
HPRO
USA USA2004 (AY973194)
TDV-KIRVDAIPPQLNQTFNTNQVEQPSTSVLSNIFISM-GVA
0
HPRO
Faroe Island FO/03/06 (HQ664993)
TDV-KIRVDAIPPQLNQTFNTNQVEQPSTSVLSNIFISM-GVA
0
HPRO
Faroe Island FO/03b/07 (HQ664997)
TDV-KIRVDAIPPQLNQTFNTNQVEQPSTSVLSNIFISM-GVA
0
HPRO
Faroe Island FO/08/07 (HQ664998)
TDV-KIRVDAIPPQLNQTFNTNQVEQPSTSVLSNIFISM-GVA
0
HPRO
Faroe Island FO/01/06 (HQ664992)
TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA
0
HPRO
Faroe Island FO/01/08 (HQ664999)
TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA
0
HPRO
Faroe Island FO/01a/08 (HQ664994)
TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA
0
HPRO
Faroe Island FO/01b/07 (HQ664995)
TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA
0
HPRO
Scotland 1703/01/86 (AJ440971)
TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA
0
HPRO
Norway FM173/11 (JN711060)
TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA
0
HPRO
Norway H97/04 (DQ108604)
TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA
0
HPRO
Norway H138/08 (JN711063)
TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA
0
HPRO
Chile CGA/1059 (KC414113)
TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA
0
HPRO
Chile CGA/ID758 (KF019742)
TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA
0
HPRO
Scotland Scot157/08 (JN711096)
TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA
0
HPRO Canada EF6-6 (AY646058) TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA 0

1The characteristic residue patterns representing the three different ISAV-HPR0 subgroups are in bold.