Table 2.
Alignment of amino acid sequences in the highly polymorphic region (HPR) of the HE gene from selected low pathogenic infectious salmon anaemia virus (ISAV-HPR0) isolates worldwide
| Group | ISAV (GenBank Acc. No) | Predicted amino acid sequence 1 | aa deleted |
|---|---|---|---|
| HPRO |
Canada 980712 (AY46060) |
TDV-JIRDAIPPQTFNTFNQPSTSVLSNIFISM-GVA |
0 |
| HPRO |
U. K. NWM10 (FJ178189) |
TDV-KIRDAIPPQLNQTFNTNQPSTSVLSNIFISM-GVA |
0 |
| HPRO |
USA USA2004 (AY973194) |
TDV-KIRVDAIPPQLNQTFNTNQVEQPSTSVLSNIFISM-GVA |
0 |
| HPRO |
Faroe Island FO/03/06 (HQ664993) |
TDV-KIRVDAIPPQLNQTFNTNQVEQPSTSVLSNIFISM-GVA |
0 |
| HPRO |
Faroe Island FO/03b/07 (HQ664997) |
TDV-KIRVDAIPPQLNQTFNTNQVEQPSTSVLSNIFISM-GVA |
0 |
| HPRO |
Faroe Island FO/08/07 (HQ664998) |
TDV-KIRVDAIPPQLNQTFNTNQVEQPSTSVLSNIFISM-GVA |
0 |
| HPRO |
Faroe Island FO/01/06 (HQ664992) |
TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA |
0 |
| HPRO |
Faroe Island FO/01/08 (HQ664999) |
TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA |
0 |
| HPRO |
Faroe Island FO/01a/08 (HQ664994) |
TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA |
0 |
| HPRO |
Faroe Island FO/01b/07 (HQ664995) |
TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA |
0 |
| HPRO |
Scotland 1703/01/86 (AJ440971) |
TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA |
0 |
| HPRO |
Norway FM173/11 (JN711060) |
TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA |
0 |
| HPRO |
Norway H97/04 (DQ108604) |
TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA |
0 |
| HPRO |
Norway H138/08 (JN711063) |
TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA |
0 |
| HPRO |
Chile CGA/1059 (KC414113) |
TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA |
0 |
| HPRO |
Chile CGA/ID758 (KF019742) |
TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA |
0 |
| HPRO |
Scotland Scot157/08 (JN711096) |
TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA |
0 |
| HPRO | Canada EF6-6 (AY646058) | TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA | 0 |
1The characteristic residue patterns representing the three different ISAV-HPR0 subgroups are in bold.