Table 1.
Repetitive element representation within Affymetrix mouse microarrays
| Microarray platform | LTR | LINE | SINE | Total |
|---|---|---|---|---|
| Murine genome u74a v2 affy_mg_u74a_v2 | 243 (0.038) | 79 (0.011) | 37 (0.002) | 359 |
| Mouse genome 430 2.0 affy_mouse430_v2 | 2085 (0.330) | 932 (0.141) | 500 (0.033) | 3517 |
| Mouse genome 430A 2.0 affy_mouse430a_v2 | 3 86 (0.061) | 94 (0.014) | 45 (0.003) | 525 |
| Mouse gene 1.0 ST affy_mogene_1_0_st | 1581 (0.250) | 233 (0.035) | 123 (0.008) | 1937 |
Numbers of probes corresponding to LTR, LINE, and SINE elements across a subset of microarray platforms are shown. Shortened platform names correspond to identifiers used within the ‘oligo’ Bioconductor R package. Numbers in brackets indicate the estimated maximum percentage coverage of all individual LTR, LINE, or SINE elements by the microarray probes identified.