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. 2014 Nov 4;107(9):2177–2184. doi: 10.1016/j.bpj.2014.09.010

Table 1.

MD simulations performed in this work

MD simulation Redox and protonation state of BNC Specific protonation in channel
1 Fe(IV)=O/CuB(II)-OH/Tyr-237-O all channel residues protonated (except Tyr-237)
2 Fe(IV)=O/CuB(II)-OH/Tyr-237-OH all channel residues protonated
3 Fe(IV)=O/CuB(II)-OH/Tyr-237-O deprotonated Tyr-244
4 Fe(IV)=O/CuB(II)-OH/Tyr-237-OH deprotonated Tyr-244
5 Fe(IV)=O/CuB(II)-OH/Tyr-237-O deprotonated Glu-15B
6 Fe(IV)=O/CuB(II)-OH/Tyr-237-OH deprotonated Glu-15B