Table 1.
Protein coding sequence features of the various sets analysed
| Category | CDSN | |||||
|---|---|---|---|---|---|---|
| TVAG(1) | CDSP | PSEUDO | LNCRNA | INTG(2) | RNDN(3) | |
| Number | 59672 | 22609 | 1976 | 2175 | 4606 | 4606 |
| Median longest ORF length | 636 | 1002 | 195 | 165 | 156 | 120 |
| Mean longest ORF length | 917.64 | 1320.23 | 286.64 | 262.63 | 199.45 | 127.05 |
| Median relative longest ORF | 99.58% | 89.19% | 42.11% | 44.69% | 34.31% | 24.52% |
| Longest ORF ≥50 aa | 99.59% | 98.92% | 64.83% | 55.82% | 53.58% | 26.90% |
| Proportion of stop codons (4) | 0.29% | 1.45% | 3.02% | 3.08% | 4.16% | 5.38% |
| GC-Content | 35.49% | 34.62% | 31.07% | 29.42% | 27.82% | 30.52% |
(1)Annotated protein-coding genes.
(2)Intergenic regions without expression evidence randomly selected in size of CDSN.
(3)Order of nucleotides randomized per sequence.
(4)In reading frame with lowest number of stop codons.