Table 1.
DATA SOURCES | FEATURES | # OF FEATURES | REMARK | CATEGORY |
---|---|---|---|---|
Gene Ontology | Semantic similarity | 3 | 3 sub-ontologies | S |
PPI network | Topological similarity Degree in PPI network |
1 2 |
FS-weight for individual protein | S L |
TAP-MS | Similarity based on purifications | 1 | C2S scores | S |
Protein complexes | Co-complex membership | 2 | real and predicted complexes | S |
Pathways | Co-pathway membership | 1 | S | |
Gene expression | Gene expression correlation | 1 | Pearson correlation | S |
Paralog | Paralog pair The number of paralogs |
1 2 |
for individual protein | S L |
Domain | Common/interacting domains The number of domains |
1 2 |
for individual protein | S L |