Table 1.
Data sources and features for predicting yeast SL pairs.
| DATA SOURCES | FEATURES | # OF FEATURES | REMARK | CATEGORY |
|---|---|---|---|---|
| Gene Ontology | Semantic similarity | 3 | 3 sub-ontologies | S |
| PPI network | Topological similarity Degree in PPI network |
1 2 |
FS-weight for individual protein | S L |
| TAP-MS | Similarity based on purifications | 1 | C2S scores | S |
| Protein complexes | Co-complex membership | 2 | real and predicted complexes | S |
| Pathways | Co-pathway membership | 1 | S | |
| Gene expression | Gene expression correlation | 1 | Pearson correlation | S |
| Paralog | Paralog pair The number of paralogs |
1 2 |
for individual protein | S L |
| Domain | Common/interacting domains The number of domains |
1 2 |
for individual protein | S L |