Table 1.

The Number of Sequencing Reads at Each Step of Our Computational Pipeline for the Pooled Sample of All 16 Strains

Step	Number of Reads in the Pool (Million)
Raw	558.4
5 ≤ size ≤ 45	546.3
Removed small RNA-derived reads	334.0
Removed unmapped reads	269.8
23 ≤ size ≤ 29	226.1