Table 1.
Assignment of individuals included in this study to haplogroups
| Pop | ID | Hapmap 1 | 1KG 2 | Chip 3 | NGS 4 | Pop | ID | Hapmap 1 | 1KG 2 | Chip 3 | NGS 4 | Pop | ID | Hapmap 1 | 1KG 2 | Chip 3 | NGS 4 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CHB |
NA18558 |
O |
N |
N1 |
N1c1c1 |
CEU |
NA06994 |
HI |
I1 |
I1 |
I1b1 |
YRI |
NA18501 |
E3a |
E1b1a8a |
E1b1a |
E1b1a |
| CHB |
NA18561 |
O |
O2b |
O2 |
O2b |
CEU |
NA07357 |
R |
R1b1b21 |
R1b1b2 |
R1b1b2 |
YRI |
NA18504 |
E3a7 |
E1b1a |
E1b1a |
E1b1a |
| CHB |
NA18562 |
O |
O |
O3a |
O3a3b1 |
CEU |
NA10851 |
R |
R |
R1b1b2 |
R1b1b2 |
YRI |
NA18507 |
E3a7 |
E1b1a |
E1b1a |
E1b1a |
| CHB |
NA18563 |
O |
O2b |
O2 |
O2b |
CEU |
NA11829 |
HI |
I1 |
I1 |
I1b1 |
YRI |
NA18516 |
E3a |
E1b1a |
E1b1a |
E1b1a |
| CHB |
NA18572 |
O |
O |
O3a |
O3a3b1 |
CEU |
NA11831 |
R |
R |
R1b1b2 |
R1b1b2 |
YRI |
NA18522 |
E3a |
E1b1a |
E1b1a |
E1b1a |
| CHB |
NA18603 |
O |
O |
O2 |
O2a1a |
CEU |
NA11881 |
HI |
I1 |
I1 |
I1b1 |
YRI |
NA18853 |
E3a |
E1b1a8a |
E1b1a |
E1b1a |
| CHB |
NA18605 |
O |
O |
O |
O3a3b1 |
CEU |
NA11994 |
R |
R1b1b21 |
R1b1b2 |
R1b1b2 |
YRI |
NA18856 |
E1 |
E1 |
E1/E2 |
E1/E2 |
| CHB |
NA18608 |
O |
N |
N1 |
N1c1c |
CEU |
NA12003 |
HI |
I2b |
I2b |
I2b |
YRI |
NA18871 |
E3a |
E1b1a8a |
E1b1a |
E1b1a |
| CHB |
NA18609 |
O |
O |
O3a |
O3a3b1 |
CEU |
NA12005 |
R |
R1b1b2 |
R1b1b2 |
R1b1b2 |
YRI |
NA19098 |
E3a |
E1b1a |
E1b1a |
E1b1a |
| JPT |
NA18940 |
D |
D2 × D2b1 |
D2a |
D2a |
CEU |
NA12043 |
R |
R1 |
R1b1b2 |
R1b1b2 |
YRI |
NA19119 |
E3a |
E1b1a8a |
E1b1a |
E1b1a |
| JPT |
NA18943 |
O |
O2b |
O2 |
O2b |
CEU |
NA12144 |
R |
R1b1b21 |
R1b1b2 |
R1b1b2 |
YRI |
NA19138 |
E3a |
E1b1a8a |
E1b1a |
E1b1a |
| JPT |
NA18944 |
D |
D2b1 |
D2a |
D2a |
CEU |
NA12154 |
R |
R1 |
R1b1b2 |
R1b1b2 |
YRI |
NA19141 |
E3a |
E1b1a8a |
E1b1a |
E1b1a |
| JPT |
NA18945 |
O |
O |
O3a |
O2b |
CEU |
NA12155 |
R |
R1 |
R1a1 |
R1a1c |
YRI |
NA19144 |
E3a |
E1b1a8a |
E1b1a |
E1b1a |
| JPT |
NA18948 |
D |
D2b1 |
D2a |
D2a |
CEU |
NA12716 |
R |
R1 |
R1b1b2 |
R1b1b2 |
YRI |
NA19153 |
E3a |
E1b1a8a |
E1b1a |
E1b1a |
| JPT |
NA18952 |
D |
D |
D2a |
D2a |
CEU |
NA12750 |
HI |
I1 |
I1 |
I1b1 |
YRI |
NA19160 |
E3a |
E1b1a8a |
E1b1a |
E1b1a |
| JPT |
NA18953 |
O |
O2b |
O2 |
O2a |
CEU |
NA1760 |
R |
R |
R1b1b2 |
R1b1b2 |
YRI |
NA19171 |
E3a7 |
E1b1a |
E1b1a |
E1b1a |
| JPT |
NA18959 |
O |
O |
O3a |
O3a3b1 |
CEU |
NA12762 |
R |
R1 |
R1b1b2 |
R1b1b2 |
YRI |
NA19200 |
E3a7 |
E1b1a |
E1b1a |
E1b1a |
| JPT |
NA18960 |
D |
D2 × D2b1 |
D2a |
D2a |
CEU |
NA12812 |
R |
R1 |
R1b1b2 |
R1b1b2 |
YRI |
NA19207 |
E3a |
E1b1a |
E1b1a |
E1b1a |
| JPT |
NA18961 |
D |
D |
D2a |
D2a |
CEU |
NA12814 |
R |
R1 |
R1b1b2 |
R1b1b2 |
YRI |
NA19210 |
E3a7 |
E1b1a |
E1b1a |
E1b1a |
| JPT |
NA18965 |
O |
O2b |
O2 |
O2b |
CEU |
NA12872 |
R |
R1b1b2g |
R1b1b2 |
R1b1b2 |
|
|
|
|
|
|
| JPT |
NA18967 |
D |
D2b1 |
D2a |
D2a |
CEU |
NA12874 |
R |
R1 |
R |
R1b1b2 |
|
|
|
|
|
|
| JPT |
NA18970 |
D |
D2 × D2b1 |
D2a |
D2a |
|
|
|
|
|
|
|
|
|
|
|
|
| JPT |
NA18971 |
C |
C1 |
C1a |
C3 |
|
|
|
|
|
|
|
|
|
|
|
|
| JPT |
NA18974 |
C |
C1 |
C1a |
C3 |
|
|
|
|
|
|
|
|
|
|
|
|
| JPT | NA19005 | O | O2b | O2 | O2b |
*E1b1a was formerly known as E3a.
1Hapmap indicates results from Hapmap consortium.
2IKG indicates results form 1000 genomes consortium.
3Chip indicates results from YHap applied to Hapmap genotype data.
4NGS indicates results from YHap applied to 1000 genomes consortium sequence data.
The resolution reported for YHap is the level at which a single assignment achieved greater than 90% posterior probability.