Table 1.

Evaluation of analysis methods

Method	Replicate	Z’ factor		GO enrichment
	correlation	siUBC	siCLSPN
PCA	0.74	-0.74	-1.31	88
Factor analysis	0.39	-1.87	-0.12	92
KS statistic	0.66	0.07	0.21	51
SVM weight vector	0.07	-84.94	-3.49	101
SVM supervised	0.75	-0.29	-1.34	83
PhenoDissim*	0.75±0.001	0.56±0.01	0.40±0.01	131±18

* mean ± standard deviation for three independent runs.